PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014160
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 572aa    MW: 64652.6 Da    PI: 6.0307
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014160genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.2e-10444492348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                            W+t E ++lv++v ++G g+W+ I r++     +R++ ++k++w+++l
  PGSC0003DMP400014160 444 YWSTTEVLKLVEGVSKYGVGRWSDIKRMFFqssVHRSPADLKDKWRNLL 492
                           6****************************99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.265436496IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-12437497IPR009057Homeodomain-like
SuperFamilySSF466891.57E-15439512IPR009057Homeodomain-like
SMARTSM007173.0E-10441494IPR001005SANT/Myb domain
CDDcd116604.96E-17443493No hitNo description
PfamPF002495.9E-8444492IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MDSFEYNWKT PNESAKSSQR EPEQVVSAAS IYFASEEEAI GVEQLFAEPE YGDIVDTLLD  60
FNTCAFSLPE SYIKEFSASE SVVTNSDRDA VQRGLSEENK TREKFLDGLS NGYNDNHCSI  120
SCEDYLLDIE LEEETPTLDD VTRDVSCIGN VNLENKLADS EQRNCGVHVL KLSDASTSSD  180
HDALDEFEDM STDKLLEVFR NMFGHQTSVA DKQWLESHMI FGLENQEMSG KNYSFPKSSF  240
DSSENQGVKV PPACQNLLTV STAFASIFNF RTKPRVQHVK RREHIQWNSF KCLSSAAGEI  300
QLDFPDKWDS KELAKENVKC DGTKLGISEQ NLKCKPSRGG FGRRYYHRGA KASSQDLGKR  360
NFQVGCIQIP PGLPIEERFI RREGHLSKDC RANRAYNGNI HSAEAQDDPS GTLSDQSSDN  420
SSEEDWTIGS ETRGTNQDRK HNKYWSTTEV LKLVEGVSKY GVGRWSDIKR MFFQSSVHRS  480
PADLKDKWRN LLRASCRRLQ SRRGVDAKKK HGVSRIPHEV LNRVRELAVI YPYSRKHRTR  540
ISPTASLASS SNVESDSQLS MNERNTLNLT Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1496509RRLQSRRGVDAKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340203.10.0PREDICTED: uncharacterized protein LOC102591958 isoform X1
TrEMBLM1AE300.0M1AE30_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000207900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134241214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.23e-24TRF-like 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]