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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400014004 |
Common Name | LOC102592823 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
HSF |
Protein Properties |
Length: 373aa MW: 42367.2 Da PI: 8.0421 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400014004 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 114.8 | 5.4e-36 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90
Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fk+g+
PGSC0003DMP400014004 25 FLTKTYQLVDDPSTDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGE 104
9*****************************************************************99.........************ PP
XXXXXXXXXXXXX CS
HSF_DNA-bind 91 kellekikrkkse 103
k+ll++i+r+k++
PGSC0003DMP400014004 105 KHLLCEIHRRKTA 117
**********986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008356 | Biological Process | asymmetric cell division |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 373 aa
Download sequence Send
to blast |
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDDST FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE IHRRKTAQPI 120 QNMSMNPHHS YHTGSGFFPN YPTNYNPRHS ISPPDSDEQF FQQQNINWCD SPSSNNNASN 180 NNFTNINTNT NTVTALSEDN DRLRRSNNML MSELAHMRKL YNDIIYFVQN HVKPVTPSSS 240 YNTCSLLPAS ATPIVQKNMN MNIHHQFGYQ QITNPKNVAI SNINNNNNNN NVVSPSKTSQ 300 SSSVTILDEG NGGGDNRSTK LFGVPLMSKK RVHPEYSSSY YSTTNMVETN KARLMVLEKN 360 DLGLNLMPPS SS*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 1e-22 | 21 | 117 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 2e-22 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
5d5v_B | 2e-22 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
5d5v_D | 2e-22 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |