PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013759
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 384aa    MW: 42529.7 Da    PI: 8.7478
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013759genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.52.3e-1599189186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                           +W++  +++Liea  +   +l+rg+l++++W+ev++++     ++++  r+ +qCk++++ l+k+yk +k++ ++ +s+   ++p+f++
  PGSC0003DMP400013759  99 CWSEAATHTLIEAWGSHYVELKRGNLRQKHWQEVANAVnalhgHSKKQFRTDIQCKNRIDTLKKKYKIEKARVSQSHSRYIPQWPFFNS 187
                           7*************************************999987778889************************999***********9 PP

              trihelix  85 le 86 
                           l+
  PGSC0003DMP400013759 188 LD 189
                           97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-2597190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MYRRPNHTDY FSPSSLFSSS NPNSSTAVQQ SNSAVAASPS SPMSDDDLVA SPSSNNNSPS  60
PSPSPPPYSV KNELATLPPP PMIPPASTRP AAFPAREDCW SEAATHTLIE AWGSHYVELK  120
RGNLRQKHWQ EVANAVNALH GHSKKQFRTD IQCKNRIDTL KKKYKIEKAR VSQSHSRYIP  180
QWPFFNSLDV LIGDNFKPSP LPVTVAPRRK TPPLLPPPPS AVPVGPRSKR PAAVMEDAVS  240
RRNFSAMAAA AAAAASEDSD EEEESETSSP ATFTAGALSR RKESGALAEG CSRLAEAIGK  300
FAEIYERVED AKQRQMVELE KQRMQFAKDL EIQRMKLIME SQVQLEKLKR AKNSSQAETL  360
DEVDNHKEHI YDQEWRMGAS HWM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013759
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350027.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLM1AD250.0M1AD25_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000201940.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-44sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]