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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400013697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HB-other | ||||||||
Protein Properties | Length: 241aa MW: 27585 Da PI: 5.4409 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40.9 | 3.4e-13 | 83 | 121 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +F+ n++p+++++ +L kkl+++++qVk+WFqNrR + k PGSC0003DMP400013697 83 AFKDNPHPDENAILKLGKKLSVDKNQVKFWFQNRRNQAK 121 7**********************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0022 | 76 | 127 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-11 | 82 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.83E-9 | 82 | 121 | No hit | No description |
SuperFamily | SSF46689 | 7.7E-10 | 83 | 124 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-10 | 83 | 121 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 12.066 | 84 | 123 | IPR001356 | Homeobox domain |
Pfam | PF03141 | 4.5E-51 | 106 | 240 | IPR004159 | Putative S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0032259 | Biological Process | methylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008168 | Molecular Function | methyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MKNNNDMGDT EKSLNDVENE SKFIDDKLEG GTVGDELDLH DKLSEGKKYD RPNSNKVQEL 60 VAYVPFQSFV FFLKIVCPFG SSAFKDNPHP DENAILKLGK KLSVDKNQVK FWFQNRRNQA 120 KDRQGTVDGV TEEVFQKDSE LWKRRVSYYK SVNNQLGQPA RYRNILDMNA FLGGFAANLV 180 NDPVWVMNIV PVEAKVNTLG AIYERELIGT YQSWCEAMST YPRTYDLIHA DSVFTLYENR 240 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400013697 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-120 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M1ACZ2 | 1e-179 | M1ACZ2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400020083 | 1e-179 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 1e-14 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400013697 |
Publications ? help Back to Top | |||
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