PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400013081 | ||||||||
Common Name | LOC102600986 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 254aa MW: 28721.5 Da PI: 8.8956 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.1 | 4.8e-30 | 130 | 189 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++DgynWrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs +d ++++ tYegeHnh+ PGSC0003DMP400013081 130 VKDGYNWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVKDASILVATYEGEHNHP 189 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-29 | 124 | 191 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.808 | 125 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-25 | 126 | 191 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-33 | 130 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-24 | 131 | 189 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGNKSFFIDL NTNPLLHNIN RSPIPRETLD EELSRMRKEN KKLATTLTSL CEKYNSLQTH 60 IIELQQKYST HEEDNSKLLL SRKRKAEEEY CVNNSYINIE EASPKRPREI ITNISTVCVK 120 TSPSDQTSVV KDGYNWRKYG QKVTRDNPSP RAYFKCSFAP TCPVKKKVQR SVKDASILVA 180 TYEGEHNHPQ PSQAEITVPL VNASDPTFLN KFMEDINTNS LQQQYLVEQM ASSLSKNPSF 240 AATVATAISG LLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-20 | 129 | 191 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400013081 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 1e-140 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015170804.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 2e-58 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | M1ABK3 | 0.0 | M1ABK3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400019061 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 8e-61 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400013081 |
Entrez Gene | 102600986 |