PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 127aa MW: 14572.6 Da PI: 10.8917

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400013069	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H PGSC0003DMP400013069 23 FSCLYCSRKFCTSQALGGHQNAH 45 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.97	23	50	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MVDHQHPPMI PKPKAKVPSS RMFSCLYCSR KFCTSQALGG HQNAHKRERA ASHRNMFSTT 60 TDSSDRNNNN SNMVRLHFLQ NNNDMEPPSL IMPQQNGKKF FSQRNETNLE IQKPIYTPSL 120 KQKKSR*

Functional Description ? help Back to Top
Source	Description
UniProt	May function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium. {ECO:0000269\|PubMed:15240552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400013069

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	1e-119	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015170792.1	4e-88	PREDICTED: uncharacterized protein LOC107063428
Swissprot	Q9FFX4	3e-14	KNU_ARATH; Zinc finger protein KNUCKLES
TrEMBL	M1ABJ3	6e-89	M1ABJ3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400019048	1e-89	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9238	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	1e-15	C2H2 family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400013069

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Sun B, et al. Timing mechanism dependent on cell division is invoked by Polycomb eviction in plant stem cells. Science, 2014. 343(6170): p. 1248559 [PMID:24482483] Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]