PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013016
Common NameLOC102600754
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 301aa    MW: 33155.5 Da    PI: 7.2918
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013016genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.71.1e-29168224158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep+YVNaKQy+rIl+RRq+Rak+e ekk  +k+rkpylheSRh+hAlrR R+sgGrF
  PGSC0003DMP400013016 168 QEPVYVNAKQYRRILQRRQSRAKAELEKKQ-IKGRKPYLHESRHQHALRRVRASGGRF 224
                           69************************9999.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-31166227IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.175167227IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-24169224IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-22170192IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-22201224IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MPSNSKSTNR EETNAYNVPR STVYPEPWWN SAVYNPVSPG LMRENASDSS SLEQSVDGQS  60
QSDGGINEED DDAPEKSQSI VPLHADGSYG KADQNFQPAA PAIPPRLDGS LAQPQQLELV  120
GHSIACAPNP YVDPYYGGMM TAFGQPLVPP HVLDMHYARM PLPQEMAQEP VYVNAKQYRR  180
ILQRRQSRAK AELEKKQIKG RKPYLHESRH QHALRRVRAS GGRFAKKTDA SKGTGSVSSS  240
GSEPLQFNAA DIQKRHENGR LAELQQSYSN GSSYGNQSTF QESKDEYQSA ESREGVFSGK  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-17168224258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141460.0BT014146.1 Lycopersicon esculentum clone 133265F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361756.10.0PREDICTED: nuclear transcription factor Y subunit A-1
RefseqXP_006361757.10.0PREDICTED: nuclear transcription factor Y subunit A-1
TrEMBLM1ABF20.0M1ABF2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000189590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.43e-56nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]