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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PGSC0003DMP400012525 |
| Common Name | LOC102587821 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
DBB |
| Protein Properties |
Length: 299aa MW: 32136 Da PI: 4.6775 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400012525 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 17.6 | 8.3e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
C+ +e e++ C ++ lC +C ++ H H++vpl
PGSC0003DMP400012525 4 QCNVCEVAEANVLCCADEAALCWSCDEKVHAAnklaskHQRVPL 47
7*****999*********************66899999999986 PP
|
| 2 | zf-B_box | 28.1 | 4.1e-09 | 53 | 90 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
++++C+ ++e +fC +++ llC++C ++H H
PGSC0003DMP400012525 53 SMPMCDICQETVGYFFCLEDRALLCRKCDIAIHTAnpH 90
689********9*********************55663 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009641 | Biological Process | shade avoidance |
| GO:0009658 | Biological Process | chloroplast organization |
| GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process |
| GO:0010099 | Biological Process | regulation of photomorphogenesis |
| GO:0015995 | Biological Process | chlorophyll biosynthetic process |
| GO:0016607 | Cellular Component | nuclear speck |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLSGS SSSMPMCDIC 60
QETVGYFFCL EDRALLCRKC DIAIHTANPH VAAHQRFLLT GVKVGLEPVD PGGISSSATS 120
QSIQKVSEPE SAPLSKRNAP VSLDAQFNKV LPTQASGVGD FAPTKSPFAG GSAAGSMPQW 180
QFDEFIGLSD FNQNYGYMDD GSYKADNGKL GGESDSSSIL RIEDEELDGD EFLGQVPDTS 240
WAVPQVPSPP TASGLYWPKT YQNPFDSAVF VPDISYSPSS SLQQQPPIGT RLKRRRQC*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
