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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400012524 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | DBB | ||||||||
Protein Properties | Length: 210aa MW: 22487.5 Da PI: 5.994 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.3 | 4.7e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC +C ++ H H++vpl PGSC0003DMP400012524 4 QCNVCEVAEANVLCCADEAALCWSCDEKVHAAnklaskHQRVPL 47 7*****999*********************66899999999986 PP | |||||||
2 | zf-B_box | 28.9 | 2.4e-09 | 53 | 90 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 ++++C+ ++e +fC +++ llC++C ++H H PGSC0003DMP400012524 53 SMPMCDICQETVGYFFCLEDRALLCRKCDIAIHTAnpH 90 689********9*********************55663 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.594 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.27E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.8E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.314 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.9E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-6 | 53 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.33E-9 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLSGS SSSMPMCDIC 60 QETVGYFFCL EDRALLCRKC DIAIHTANPH VAAHQRFLLT GVKVGLEPVD PGGISSSATS 120 QSIQKVSEPE SAPLSKRNAP VSLDAQFNKV LPTQASGVGD FAPTKSPFAG GSAAGSMPQW 180 QFDEFIGLSD FNQNYGYMDD GSYKVRFKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400012524 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348330.1 | 1e-150 | PREDICTED: B-box zinc finger protein 22 isoform X1 | ||||
Swissprot | Q9SYM2 | 4e-81 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | M1AA74 | 1e-154 | M1AA74_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400018196 | 1e-150 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 2e-83 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400012524 |
Publications ? help Back to Top | |||
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