PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012441
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 355aa    MW: 39195.8 Da    PI: 7.3893
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012441genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001286103219
                           EETTTTEEESSHHHHHHH CS
               zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                           +C++Cgk Fs++ ++  H
  PGSC0003DMP400012441  86 VCENCGKEFSSWKSFLEH 103
                           6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.61638IPR007087Zinc finger, C2H2
SMARTSM003556.11638IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.05E-61638No hitNo description
PfamPF139120.00341638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576679.05E-680104No hitNo description
SMARTSM0035518085105IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.23E-5225248No hitNo description
SMARTSM003550.13226248IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076226253IPR007087Zinc finger, C2H2
PfamPF139129.5E-10226250IPR007087Zinc finger, C2H2
PROSITE patternPS000280228248IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-5289309No hitNo description
PfamPF139125.8E-6294309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MACIDQEQQQ QPIFKHYCRV CKKGFVCGRA LGGHMRAHGI GDEGANIDDD DPASDWEDKF  60
GGGVKGGNKR LYQLRTNPNR QKSNRVCENC GKEFSSWKSF LEHGKCSSED AESLVSSPCS  120
EGEDYINNGG RKGYGWSKRK RSLRTKIGTI NSTSTYPSSE DEDLVLAKCL IDLANAKVDM  180
SLAEPEESCA SASKEEERVR NPMNYLTPLV RPFDNKAKGV SNKGLFECKA CKKVFNSHQA  240
LGGHRASHKK VKGCYAAKQD QLDDSLIDDN DMNITQDDQF TLQGSKSMRK SKIHECSICH  300
RVFSTGQALE DDEADSKLKL AKLSELKDMN KNSENPSHWL QVGIGPTTQV GADP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012441
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345608.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLM1AA050.0M1AA05_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000180760.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-20C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]