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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400012281 | ||||||||
Common Name | LOC102604650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 444aa MW: 48677.2 Da PI: 6.6613 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.4 | 7.2e-29 | 207 | 265 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK +g+++prsYYrC+ a Cpv+k+v+r+ ed +++++tYeg+Hnh+ PGSC0003DMP400012281 207 NDGCQWRKYGQKISRGNPCPRSYYRCSVApLCPVRKQVQRCLEDMSILITTYEGTHNHS 265 8***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-30 | 191 | 267 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.09E-25 | 198 | 267 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.267 | 201 | 267 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-34 | 206 | 266 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 207 | 264 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MEKKLDNSIS RANNHEEEDI KKALKDDEFK SAIAEVNEIK LENARLKLLL QQIEKDYTSL 60 QTRFFNICQP DLKKSGSPTC THENIADEEE SELVSLRLGR SPSPSESKKV DKKRSYDKTI 120 EDYPSCDGQS NDGLKLGLDY STRISEPDLI KPSNDPTPGP TSEVVKTVKR CDDESVKKDA 180 GDDEVSQPNV KRARVSVRTK CDYPTINDGC QWRKYGQKIS RGNPCPRSYY RCSVAPLCPV 240 RKQVQRCLED MSILITTYEG THNHSLPIEA TAMASTTSAA ASMLLSGSST SSKNFPNLPN 300 ISKTTPLYLS NSSSNPFPTI TLDFTTFPTT SSFTSFNFPS NFQSGSGFLS NSLSFSSPES 360 TTMTKILGNG GLNYDSTSTL PYHNNLINIG SSQKQFDTSS NKLKEDSSQQ ALTETLTKAI 420 TSDPSFQSVL AAAISSMVGA TKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-22 | 193 | 267 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 170 | TVKRC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400012281 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357198.1 | 0.0 | PREDICTED: probable WRKY transcription factor 72 | ||||
TrEMBL | M1A9L5 | 0.0 | M1A9L5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400017859 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12805 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 9e-60 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400012281 |
Entrez Gene | 102604650 |
Publications ? help Back to Top | |||
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