PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400012267

Common Name

LOC102603647

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ZF-HD

Protein Properties

Length: 330aa MW: 36061.2 Da PI: 8.0748

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400012267	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.3	7.9e-33	51	107	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v+YkeClkNhAa+lG+havDGCgEf+p + ++ +++++lkCaACgCHRnFHRr++e PGSC0003DMP400012267 51 VVVYKECLKNHAANLGTHAVDGCGEFLPIPAANpADPTSLKCAACGCHRNFHRRDPE 107 589*************************9999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.8E-27	52	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-21	54	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.923	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.3E-29	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.94E-17	180	245	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-27	183	246	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.6E-24	188	244	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MELNTNTTTA PAAAIKTPEL AETETPSRIQ QPKPFPFSNG VLKRKNHHPV VVVYKECLKN 60 HAANLGTHAV DGCGEFLPIP AANPADPTSL KCAACGCHRN FHRRDPEEPP PIATAAIEYQ 120 PHHRHHPPPP CGDHSSPNSP SPPPISSAYY PASAPHMLLA LSAGFSGEKN QNLPTSTTPV 180 AVANSNGRKR FRTKFTPDQK MKMLKFAEKV EWKMQKRDED LVNNFCNEIG VEKGVLKVWM 240 HNNKTTSVSG KKLDQPITGN GDHQNGNTNN IVNGFCIVSR NNTTHPDQNN TDSEFHIHHE 300 SSMNDDNKKE HLSFDANNVV VTNGSSSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-19	189	249	18	78	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400012267

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006357111.1	0.0	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9LXG0	4e-66	ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBL	M1A9K2	0.0	M1A9K2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400017840	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	5e-59	homeobox protein 30

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400012267
Entrez Gene	102603647

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]