 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PGSC0003DMP400012203 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 226aa MW: 26095 Da PI: 6.8838 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400012203 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.9 | 1.5e-17 | 34 | 87 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k
PGSC0003DMP400012203 34 KKRRLNLEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 87
4557899*********************************************99 PP
|
| 2 | HD-ZIP_I/II | 129.2 | 1.7e-41 | 33 | 123 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++
PGSC0003DMP400012203 33 EKKRRLNLEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKSDNDALKTQNKNLHS 121
69**************************************************************************************9 PP
HD-ZIP_I/II 90 el 91
e+
PGSC0003DMP400012203 122 EI 123
87 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MLMRRAMSFD HQDSRVDDID MSDDDGSSQL LGEKKRRLNL EQVKALERSF EIGNKLEPER 60
KMQLARALGL KPRQIAIWFQ NRRARCKTKQ LEKDYEILKR QCDKLKSDND ALKTQNKNLH 120
SEILSLRNRE SGGGGTPILF NLNKENEGSN WNNGSGDENS TIIDVNLGRT SSTNSPHNNN 180
NHDHVFQTAN FKIEEQTHEE GFCNMFTNVE DQTNYWPLPV QQHFY*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
