PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YA

Protein Properties

Length: 304aa MW: 33175.7 Da PI: 9.1092

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400012164	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.8	1.3e-31	145	201	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e e+k +k+rkpylheSRh+hA+rR+RgsgGrF PGSC0003DMP400012164 145 EEPVYVNAKQYHGILRRRQIRAKAELERKA-IKARKPYLHESRHQHAMRRARGSGGRF 201 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.1E-36	143	204	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.291	144	204	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.9E-27	146	201	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-24	147	169	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	149	169	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-24	178	201	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MPTIAKHDGR QLETGLRITS QSTTQMQPWW QGYGDNTMPL ASENAVAQGK SEGGNEEKET 60 KALALESGSD GNNEQYKQHL KHFAPTTAAI MAEQQKELTG HSAMLASYPY PDMQYGGMMT 120 YGAPVHPHLF EIHHARMPLP LDMEEEPVYV NAKQYHGILR RRQIRAKAEL ERKAIKARKP 180 YLHESRHQHA MRRARGSGGR FLNTKKGNDM DCTPEETKKY GATIPTHSGN SSGSGSSDQG 240 GKEGSTVQDM HKGHSHSFAT GNGHGSSVYF AQSTGSEQGN GHYGRGSWNL LVNQASQGAA 300 SSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-20	145	208	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400012164

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-167	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006345444.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q945M9	1e-37	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	M1A9B5	0.0	M1A9B5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400017698	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11232	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	3e-39	nuclear factor Y, subunit A9

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400012164
Entrez Gene	102589526

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]