PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011381
Common NameLOC102582612
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 1194aa    MW: 129871 Da    PI: 4.9585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011381genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033403425223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            C +C+ +F++k++L +H+   H
  PGSC0003DMP400011381 403 HCDKCNVTFNNKDDLLQHQLFsH 425
                           5******************8777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.115274347IPR001739Methyl-CpG DNA binding
SuperFamilySSF541712.94E-6280326IPR016177DNA-binding domain
PROSITE profilePS5015710.221402430IPR007087Zinc finger, C2H2
SMARTSM003550.01402425IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280404425IPR007087Zinc finger, C2H2
SMARTSM003551.2448470IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162448475IPR007087Zinc finger, C2H2
PROSITE patternPS000280450470IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1194 aa     Download sequence    Send to blast
MASVTVDSSS ATVPDGALQA ESIPTVDLRL LSQSELYSLS LCSTAAFNPC RDDDVIIPKI  60
DRSVFNESAG SRKQTYSRLR LAPAAAASAS SSAIRSRTPH LRNSPHPLQN PSPNNGPANS  120
ESSQIVILLK QLFGSGTQKN PTDLVPIRVD YSDSLSVPSH VPVPGLELAN VGSVGQKRKR  180
GRPRKNENGV RVAEVKVDEV VKDIVVYQNV DDSDKEIMNK DGIPVDLAVL GALVDPFGLE  240
LRRRTEGLGS AEELLGFLGR LNGQWGSTRK KRRIVDADEF GSVLPKSWKL LLSIKRKEGR  300
SWLHCRRYIS PNGRQFGTCK EVSSYLLFLH GERKENLPAY ANGSGTVEIT NACALTSDLR  360
IQDGGKKESS VFHNSSPAVG HGELQVLVNF GELSEVQVGD LLHCDKCNVT FNNKDDLLQH  420
QLFSHQRRRS RNGGQSITDG VIIRDGKFEC QFCHKTFEEK HRYNGHVGNH VKKQVKTVDG  480
SLPIKLGGGV EPVVPSGAML RDPIMQDSVV LPRNLTENAG VITDAGDNPA PTSKIQEEDH  540
METDDKLEAE GTSNGCHNQE GSSVSRSPIS SNEKTCVDIS KVIVGSNIEV PEQEGLLCSN  600
DIVDSCGVSM EDGNFFPTVD ESKVDGRSVD TESTTVLCSN ASLPGGNSLI KARQIPHTED  660
HSGKNIDDLN GVSFLAETSK GNRDLKSSTG TPSCDKEGST VDYVGVLSGC VGEHKPSSMM  720
SDMENKECGS LVDSNDNKLI MKEDNHAFVP HPDKHVNTAE RDVVDVSACI LEELGQKKGD  780
ESSLLSPACD KNSEVESLIF NDLKTSADEP KISELQSVRS NIVGFTSSDN HAVKKVAASD  840
IEKEKSLAFS PLFPAMNARA SCAEDDYTKV YQSTLEGNDL QRSASALFST TNVPEASTKE  900
YTMHRSYNNS LKESKFDCLE NPRHHDLNVV FDNSHVDLGV NLNCTTFQLG MEETYGVQDN  960
LQKRLETDKH GEVGIDLRDS SFKEKAGDFG SNFNTVFHSQ LWNEHKLDEV DNSGKKIITS  1020
FGCGDAKPNE DVMAGSIWRA GVENVMQGGS ADNSTSVAQS SNCFQTYDVL SDKVPNLFGE  1080
NEKYDGNTGF DGLSSDRSGP VEYSFMSTQS SNSLQEEPRV LPYDVDIEQG FNSSFWLGKD  1140
NLMPNLAGSN QVTMVCVWCR NLFYQDSNQL EAGSIGAMCP TCSGSTAGQF SFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011381
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364865.10.0PREDICTED: uncharacterized protein LOC102582612 isoform X2
TrEMBLM1A7M70.0M1A7M7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000164250.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78501619
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]