PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011195
Common NameLOC102598883
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 374aa    MW: 40844.5 Da    PI: 7.4201
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011195genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.69.1e-18197251256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  PGSC0003DMP400011195 197 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTK 251
                           778899***********************************************98 PP
2HD-ZIP_I/II126.79.9e-41197287192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq++ LEesF+e+++L+p++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr 
  PGSC0003DMP400011195 197 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLHKELQELR- 284
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 elk 92 
                           +lk
  PGSC0003DMP400011195 285 ALK 287
                           555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-18171254IPR009057Homeodomain-like
SuperFamilySSF466891.37E-18184254IPR009057Homeodomain-like
PROSITE profilePS5007117.184193253IPR001356Homeobox domain
SMARTSM003891.9E-15195257IPR001356Homeobox domain
CDDcd000862.24E-15197254No hitNo description
PfamPF000464.2E-15197251IPR001356Homeobox domain
PROSITE patternPS000270228251IPR017970Homeobox, conserved site
PfamPF021836.0E-11253287IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.3E-26253296IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MELGLSLGDA KTNNTTNSSP KSFFLCKKNV ISTCNDHEKK KSLGFCMALG INSSSERVEQ  60
DEDDEENNTS EEGTNNTLPV QLDLLPLVPV PLPPTNNLPQ SLHWSSDNGS SENVSSGNGG  120
LPAARGFDVN RLPAAGMDEV SSPNSVASSF RMDFGLFKSC VNIIGVGNKR NSESAGGEPE  180
RASSRASDDD ENGANTRKKL RLSKEQSAYL EESFKEHHTL NPKQKLALAK QLSLRPRQVE  240
VWFQNRRART KLKQTEVDCE YLKRCCETLT DENRRLHKEL QELRALKTSN PFYMQLPATT  300
LTMCPSCERV ASTTTTTSAA TAPPITAATA TATTTTTSDS IPKAIPFLNS RPRFFPFTTT  360
NNNPNHSHQS AAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201TRKKLRL
2245253RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011195
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-163HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359162.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotQ6YPD05e-88HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLM1A7650.0M1A765_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000161460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-75homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]