PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400010919 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 245aa MW: 27144.2 Da PI: 6.5117 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.4 | 3.3e-29 | 145 | 202 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK v+g+ef+rsYY+Ct +C +kk+vers+ d+++++i+Y +H+h+k PGSC0003DMP400010919 145 KDGYNWRKYGQKLVRGNEFTRSYYKCTRINCLAKKQVERSQ-DGHITNIHYIAKHEHPK 202 7****************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.769 | 139 | 203 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-25 | 139 | 203 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-23 | 142 | 203 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-29 | 144 | 202 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-22 | 145 | 201 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGVSKDDVSQ SNQEDSSLSN VPEKDTEYVH QKKGPESEGG ASESSRVSVL PKKEPYIISC 60 KSDSPVKDGN ISLVPGKASD SSQQIQSQKM EEVVSQPHQE QVTSSPMAEN ALCKLRSRRN 120 PDMSVQDLPS DKGVTPFSEP EKPSKDGYNW RKYGQKLVRG NEFTRSYYKC TRINCLAKKQ 180 VERSQDGHIT NIHYIAKHEH PKPLNSPQIS PELVVPSEMT QPDMPTETPR EGTQDCPSQL 240 LCSV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400010919 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363023.1 | 1e-167 | PREDICTED: probable WRKY transcription factor 20 isoform X1 | ||||
TrEMBL | M1A6I3 | 1e-179 | M1A6I3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400015754 | 1e-167 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 8e-27 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400010919 |
Publications ? help Back to Top | |||
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