PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400010515

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TALE

Protein Properties

Length: 685aa MW: 75844.4 Da PI: 7.3608

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400010515	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	411	448	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + PGSC0003DMP400010515 411 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 448 554459******************************88 PP
2	BELL	120.6	7.1e-39	275	346	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakLl +leeV++rY+qy++q+q+++ssFe+vag+gsak+Yt+lAl+aiS++FrcLkdaiaeq+ PGSC0003DMP400010515 275 QRQELQMKKAKLLAMLEEVEQRYRQYHHQMQIIVSSFEQVAGIGSAKSYTQLALHAISKQFRCLKDAIAEQV 346 69********************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.3E-59	199	344	IPR006563	POX domain
Pfam	PF07526	4.4E-49	204	343	IPR006563	POX domain
PROSITE profile	PS50071	12.05	389	452	IPR001356	Homeobox domain
SMART	SM00389	4.2E-10	392	456	IPR001356	Homeobox domain
CDD	cd00086	5.67E-12	392	453	No hit	No description
SuperFamily	SSF46689	5.13E-17	393	458	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-29	395	458	IPR009057	Homeodomain-like
Pfam	PF05920	2.7E-18	409	448	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MYYQGTSDNN IQADHQQHHN HGNSSNNNNI QTLYLMNPNN YMQGYTTSDT QQQQQLLFLN 60 SSPAGSNALC HANIQHAPLQ QQHFVGVPLP AVSLHDQINH HGLLQRMWNN QDQSQQVIVP 120 SSTGVSATSC GGITTDLASQ LAFQRPIPTP QHRQQQQQQQ GGLSLSLSPQ QQQQISFNNN 180 ISSSSPRTNN VTIRGTLDGS SSNMVLGSKY LKAAQELLDE VVNIVGKSIK GDDQKKDNSM 240 PLASDVNTNS SGGGGGGESS SRQKNEVAIE LTTAQRQELQ MKKAKLLAML EEVEQRYRQY 300 HHQMQIIVSS FEQVAGIGSA KSYTQLALHA ISKQFRCLKD AIAEQVKATS KSLGEEEGLV 360 GKIEGSRLKF VDHHLRQQRA LQQLGMMQPN AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK 420 DSDKIMLAKQ TGLTRSQVSN WFINARVRLW KPMVEEMYLE EVKNQEQNST NTSGDNKNKE 480 APNEEKHPII TSSLLQDGIT TTQAEISTST ISTSPTAGAS LHHAHNFSFL GSFNMDNTTT 540 TTVDHIENNA KKQRNDMHKF SPSSILSSVD MEAKARESSN KGFTNPLMAA YAMGDFGRFD 600 PHDQQITANF HGNNGVSLTL GLPPSENLAM PVSQQNYLSN DLGSRPEMGS HYNRMGYENI 660 DFQSGNKRFP TQLLPDFVTG NLGT*

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MYYQGTSDNN IQADHQQHHN HGNSSNNNNI QTLYLMNPNN YMQGYTTSDT QQQQQLLFLN  60
SSPAGSNALC HANIQHAPLQ QQHFVGVPLP AVSLHDQINH HGLLQRMWNN QDQSQQVIVP  120
SSTGVSATSC GGITTDLASQ LAFQRPIPTP QHRQQQQQQQ GGLSLSLSPQ QQQQISFNNN  180
ISSSSPRTNN VTIRGTLDGS SSNMVLGSKY LKAAQELLDE VVNIVGKSIK GDDQKKDNSM  240
PLASDVNTNS SGGGGGGESS SRQKNEVAIE LTTAQRQELQ MKKAKLLAML EEVEQRYRQY  300
HHQMQIIVSS FEQVAGIGSA KSYTQLALHA ISKQFRCLKD AIAEQVKATS KSLGEEEGLV  360
GKIEGSRLKF VDHHLRQQRA LQQLGMMQPN AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK  420
DSDKIMLAKQ TGLTRSQVSN WFINARVRLW KPMVEEMYLE EVKNQEQNST NTSGDNKNKE  480
APNEEKHPII TSSLLQDGIT TTQAEISTST ISTSPTAGAS LHHAHNFSFL GSFNMDNTTT  540
TTVDHIENNA KKQRNDMHKF SPSSILSSVD MEAKARESSN KGFTNPLMAA YAMGDFGRFD  600
PHDQQITANF HGNNGVSLTL GLPPSENLAM PVSQQNYLSN DLGSRPEMGS HYNRMGYENI  660
DFQSGNKRFP TQLLPDFVTG NLGT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	6e-16	398	456	5	63	Homeobox protein Meis2
3k2a_B	6e-16	398	456	5	63	Homeobox protein Meis2
Search in ModeBase

Function -- GeneRIF ? help Back to Top
BEL5 controls tuber formation by regulating the expression of tuberization genes. [PMID: 26553650]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400010515

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF406697	0.0	AF406697.1 Solanum tuberosum BEL1-related homeotic protein 5 (Bel5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361091.1	0.0	PREDICTED: BEL1-related homeotic protein 5 isoform X1
TrEMBL	M1A5L2	0.0	M1A5L2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400015183	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-94	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400010515
Entrez Gene	102577460

Publications ? help Back to Top
Chen H,Rosin FM,Prat S,Hannapel DJ Interacting transcription factors from the three-amino acid loop extension superclass regulate tuber formation. Plant Physiol., 2003. 132(3): p. 1391-404 [PMID:12857821] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Sharma P,Lin T,Hannapel DJ Targets of the StBEL5 Transcription Factor Include the FT Ortholog StSP6A. Plant Physiol., 2016. 170(1): p. 310-24 [PMID:26553650]