PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010384
Common NameLOC102603967
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 314aa    MW: 35746.7 Da    PI: 7.7643
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010384genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.31.1e-3149154199
                           EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           f+kv tpsdv+k++rlv+pk++ae++     +++ +++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++
  PGSC0003DMP400010384  49 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsSSNDKGGLLLNFEDSNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQR 137
                           89****************************955666889*************************************************7 PP

                           -.SS.SEE..EEEEE-S CS
                    B3  85 d.gr.sefelvvkvfrk 99 
                             g+ s+ +l++ ++r+
  PGSC0003DMP400010384 138 GaGElSKHRLFIDWRRR 154
                           76999999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-4140159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-3146155IPR015300DNA-binding pseudobarrel domain
CDDcd100173.48E-2547137No hitNo description
SMARTSM010192.8E-2149155IPR003340B3 DNA binding domain
PROSITE profilePS5086314.29749155IPR003340B3 DNA binding domain
PfamPF023622.3E-2949154IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNFFGSVVRE EASSSSYHNQ QLKRPSSTTE LTLMDSSTSD AMIEREHMFD KVVTPSDVGK  60
LNRLVIPKQH AEKYFPLDSS SNDKGGLLLN FEDSNGKPWR FRYSYWNSSQ SYVMTKGWSR  120
FVKEKKLDAG DIVSFQRGAG ELSKHRLFID WRRRPHENIN NQFMMPHQFS DGRLFHLQSY  180
YPTTYSSNLL FEGGSNIGQP PNYYNPHSYM YGIGNLSYNM SNSAVINANP LNNEIRWGGC  240
SNTSNYVEPR VFDSVPVVQG KVAAKRFRLF GVNMDCPMDH PDTSSIPTTT YNSHLNNNSE  300
ESSEKGKSFD LDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-63421551114B3 domain-containing transcription factor NGA1
5os9_B1e-63421551114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010384
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352221.10.0PREDICTED: B3 domain-containing transcription factor NGA3-like
SwissprotQ9MAN13e-69NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLM1A5940.0M1A594_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000150110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-71B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]