PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010367
Common NameLOC102603294
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 324aa    MW: 36715.4 Da    PI: 9.6791
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010367genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-151461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+W+t Ed+ll++++k+ G g+W+  +++ g+ R++k+c++rw +yl
  PGSC0003DMP400010367 14 KGPWSTKEDLLLANYIKENGEGQWRNLPNKAGLLRCGKSCRLRWMNYL 61
                          79******************************99************97 PP
2Myb_DNA-binding53.36.2e-1767111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg+++++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++
  PGSC0003DMP400010367  67 RGNFSQDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111
                           89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.94961IPR017930Myb domain
SuperFamilySSF466897.81E-2811108IPR009057Homeodomain-like
SMARTSM007177.9E-111363IPR001005SANT/Myb domain
PfamPF002491.4E-131461IPR001005SANT/Myb domain
CDDcd001675.95E-81661No hitNo description
PROSITE profilePS5129425.50862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2565116IPR009057Homeodomain-like
SMARTSM007176.6E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567111IPR001005SANT/Myb domain
CDDcd001672.31E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRAPCCAKE GLRKGPWSTK EDLLLANYIK ENGEGQWRNL PNKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNF SQDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HVIKKLKIAG  120
IQPKLHKVHK VSPKKDPKKK PKTENPRKKQ DKMKKNNKKK DQSLDTPQVV FVPKPIRLSS  180
ELIRNSSIEN VALLSNSSLC CSNSLKMLPQ TCQVLKKCTI SKGSDIHLSA FLKSPSNIAS  240
PSDSYEEGDN NNKKINVITN DDENVEGKIK EVSFIPCASN LLFDEVLLDG FCDLSNESML  300
EKVYEEYLQL ISEKCYQDDP MLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142PKKKPKT
2136154PKKKPKTENPRKKQDKMKK
3137148KKKPKTENPRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010367
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166333.10.0PREDICTED: transcription factor MYB90-like
TrEMBLM1A5770.0M1A577_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000149830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.19e-63myb domain protein 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]