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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PGSC0003DMP400010350 |
| Common Name | LOC102604975 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
WRKY |
| Protein Properties |
Length: 306aa MW: 34069.8 Da PI: 7.4034 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400010350 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 55.8 | 9e-18 | 122 | 172 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
dDgy+WrKYGqK++ g+ fpr YrCts ++++rs+ d +v+eit++g H++
PGSC0003DMP400010350 122 DDGYSWRKYGQKDILGAVFPRDCYRCTS------RHMQRSDVDRTVFEITNKGYHTC 172
8**************************7......689******************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MDYDSLINKL TQGMEHTKQL RTYLSSVAST SKAIPELLLQ KILSSYEQSL LILKWSGSPV 60
QSVPAAPAIE SMVSGDVKPR SDDNKRSSED HQKLIHISKR RKPYFSEQVR VKSESEVEGP 120
QDDGYSWRKY GQKDILGAVF PRDCYRCTSR HMQRSDVDRT VFEITNKGYH TCLRHQVTNS 180
TLQATSPEKE ASHHGVIVGG CSSSFVSPTT PESNYLSISN CQMNGLGIAH NLDHSESYPS 240
DIGLFRDLHH SDSDRTDISA NTSTTSSSMG GEFARLSGGR PDFSIWTKRH PQTKANTPQK 300
DDKDE*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975447 | 1e-173 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
| Publications
? help Back to Top |
- Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
An extracellular subtilase switch for immune priming in Arabidopsis.
PLoS Pathog., 2013. 9(6): p. e1003445
[PMID:23818851] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Singh V,Roy S,Singh D,Nandi AK
Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
J. Biosci., 2014. 39(1): p. 119-26
[PMID:24499796] - Zhang H, et al.
Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
Front Plant Sci, 2015. 6: p. 686
[PMID:26388886] - Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
PLoS Pathog., 2016. 12(11): p. e1006003
[PMID:27806116] - Chen X, et al.
POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis.
Elife, 2017.
[PMID:27873573] - Nie P, et al.
Induced Systemic Resistance against Botrytis cinerea by Bacillus cereus AR156 through a JA/ET- and NPR1-Dependent Signaling Pathway and Activates PAMP-Triggered Immunity in Arabidopsis.
Front Plant Sci, 2017. 8: p. 238
[PMID:28293243] - Ren Y,Li Y,Jiang Y,Wu B,Miao Y
Phosphorylation of WHIRLY1 by CIPK14 Shifts Its Localization and Dual Functions in Arabidopsis.
Mol Plant, 2017. 10(5): p. 749-763
[PMID:28412544] - Sarkar S, et al.
Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
Planta, 2018. 247(1): p. 181-199
[PMID:28913593] - Crespo-Salvador Ó,Escamilla-Aguilar M,López-Cruz J,López-Rodas G,González-Bosch C
Determination of histone epigenetic marks in Arabidopsis and tomato genes in the early response to Botrytis cinerea.
Plant Cell Rep., 2018. 37(1): p. 153-166
[PMID:29119291] - Yuan N, et al.
STRESS INDUCED FACTOR 2, a Leucine-Rich Repeat Kinase Regulates Basal Plant Pathogen Defense.
Plant Physiol., 2018. 176(4): p. 3062-3080
[PMID:29463771]
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