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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400010347 | ||||||||
Common Name | LOC102586959 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 154aa MW: 17368.3 Da PI: 7.0734 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 28.5 | 3e-09 | 133 | 153 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 dDgy+WrKYGqK++ +++pr PGSC0003DMP400010347 133 DDGYSWRKYGQKDILRAKYPR 153 8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.5E-8 | 125 | 153 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.59E-7 | 131 | 153 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-6 | 133 | 153 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 9.488 | 133 | 153 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MDCASNWEYK TLINELTQGI EHTKQLREHF HSTASTFENQ ELLLQKILSS YEQSLLILNW 60 GGSTVQSPPA LPPSTGAIES SVSIDGSPKS DDKKRSFQDH HELINISKKR KSQPTWTEQV 120 KVSAESGFEG PTDDGYSWRK YGQKDILRAK YPR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 110 | KKRSFQDHHELINISKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400010347 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-160 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352253.1 | 1e-109 | PREDICTED: probable WRKY transcription factor 53 | ||||
TrEMBL | M1A557 | 1e-109 | M1A557_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1A558 | 1e-107 | M1A558_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400014949 | 1e-108 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 7e-32 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400010347 |
Entrez Gene | 102586959 |
Publications ? help Back to Top | |||
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