PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 273aa MW: 31224.2 Da PI: 7.2819

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400009532	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.6e-08	151	198	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a +L + ++Y++sLq PGSC0003DMP400009532 151 SHSLAERVRRGKINERLGCLQDIVPGC----YKSMGMAVMLDEIINYVQSLQ 198 8***********************8....3569999*********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.85E-16	145	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.33E-9	145	202	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-15	147	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.869	147	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-5	151	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-8	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MAFHYFNPDM QIIIPQFSLL NTDTNLNFHN QFPEQNYLNT TSLEMSNFNF HKHSDEHIFN 60 QIPEFPIGLI ENFQQDMFNL SVPARNDINE SKKRKTIETP ESSSAYSSPA VSSRRKTSKG 120 RGKRVKSDDN EEEKLRQVVH VRAKRGQATD SHSLAERVRR GKINERLGCL QDIVPGCYKS 180 MGMAVMLDEI INYVQSLQNQ VEFLSMKLSA ASTYYDFNSE TDILETMQRA KAYETHMMQK 240 LKKEGCEGVG SNQVAPLIDH TFGCYPKLSY NT*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400009532

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	1e-139	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006353818.2	0.0	PREDICTED: transcription factor BEE 1-like
Swissprot	Q8GWK7	1e-59	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	M1A3B8	0.0	M1A3B8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400013766	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3971	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	9e-61	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400009532
Entrez Gene	102581324

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]