PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009436
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 316aa    MW: 35492 Da    PI: 10.2713
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009436genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.42.2e-11288310224
                           --SS-EEEEEEE--TT-SS-EEE CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsY 24 
                           +D+y+WrKYGqK++kgs++pr Y
  PGSC0003DMP400009436 288 SDEYSWRKYGQKPIKGSPHPRYY 310
                           69*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.6E-18240285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.2E-11276310IPR003657WRKY domain
PROSITE profilePS5081112.989282310IPR003657WRKY domain
SuperFamilySSF1182905.49E-9285310IPR003657WRKY domain
SMARTSM007740.003287314IPR003657WRKY domain
PfamPF031061.0E-7289310IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEEIEEVNKA AVENCHRVIS LLSSRTHDQI SYTNLVRETG EAVHKFKKVV TLLNSTLGHA  60
RVRKSNKFKT PLPHNILVEN PNCKIDDHAK ALRLLPIDSP ENRVLEMGAN VKCNLTLGSP  120
SLELSSNSRN PLNFGQQTPF PSYNYLQQQQ QEQQQQQQQQ QQRRFLLQQQ QQLKHPAEMM  180
YRRSNSGVSL NFDSSTCTPT MSSTRSFISS LSVDGSVANG NSFHLIGASH SADQSSFQHK  240
RKCSGRGDEG SGKCGSSGRC HCSKKRKHRV KRSIKIPAVS NKLADIPSDE YSWRKYGQKP  300
IKGSPHPRYY SHLLP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009436
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366665.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_015160479.10.0PREDICTED: probable WRKY transcription factor 21
RefseqXP_015160480.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043362e-82WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLM1A3390.0M1A339_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000136320.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.15e-82WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]