PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009091
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24267.5 Da    PI: 6.5428
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009091genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.83.3e-191968149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                          k+i+n+  r+vtfskRr g++KKA+EL++L +ae+ +++ s ++++l+++
  PGSC0003DMP400009091 19 KPIDNQNSRHVTFSKRRLGLFKKASELCILSGAEIVILVQSlKRQRLFTF 68
                          78*************************************99567888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-231171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.1141159IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-211282IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-111333IPR002100Transcription factor, MADS-box
PfamPF003193.5E-182168IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-113348IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTTINAVKKT QGRRKIAIKP IDNQNSRHVT FSKRRLGLFK KASELCILSG AEIVILVQSL  60
KRQRLFTFGH PSPDAVIDRY LTGKSSTSGD GDQFNLQQNN QYYSQICRDL ELEKKKKENI  120
EESKMVNNGE FWWNEPIEDM GIEGLEEFMS ALEELKKKVT MRADELSMIN GSSSNSTMKI  180
ARFGAEDQYL NEAIDYCSSI VPFDFNQTGD GQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009091
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231377.11e-149agamous-like MADS-box protein AGL62
TrEMBLM1A2B31e-157M1A2B3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000131051e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-33AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]