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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400009069 |
Common Name | LOC102585595 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
bHLH |
Protein Properties |
Length: 354aa MW: 39807 Da PI: 6.7942 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400009069 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 39.9 | 7.8e-13 | 173 | 220 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ h ++Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq
PGSC0003DMP400009069 173 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 220
6799************************.....9******************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MEYYGFNQQW PISSYDELSA ISIATSFGHE NNLHESFMSH DQPLLGHKRP IELSQIVEER 60 PLKNSKTGHN WNNNIENDQI LSSQSVVSPN YSHLMNSSNN YTNQQVVTMK PKEETTNLSS 120 SSISFAADHC HNNMVCHQDS FANQNYMMFK AANNSCQGSN KSVSTNGKLT QAQDHIIAER 180 KRREKLSQRF IALSALIPGL KKMDKASVLG DAIKYLKQLQ EKVKTLEEQT KKKSVESVVF 240 VKKYELYGDG ENSSSDENYS SGTVPVDEAL PEIEARISEK DVLIRIHCEK RKGIVEKTVA 300 EIEKLHLSVI NTCALSFGSS ALDITIIAQM DEEFTMTVKD LVKNLRSALK MFM*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 7e-14 | 174 | 248 | 8 | 80 | Transcription factor MYC2 |
5gnj_B | 7e-14 | 174 | 248 | 8 | 80 | Transcription factor MYC2 |
5gnj_E | 7e-14 | 174 | 248 | 8 | 80 | Transcription factor MYC2 |
5gnj_F | 7e-14 | 174 | 248 | 8 | 80 | Transcription factor MYC2 |
5gnj_G | 7e-14 | 174 | 248 | 8 | 80 | Transcription factor MYC2 |
5gnj_I | 7e-14 | 174 | 248 | 8 | 80 | Transcription factor MYC2 |
5gnj_M | 7e-14 | 174 | 248 | 8 | 80 | Transcription factor MYC2 |
5gnj_N | 7e-14 | 174 | 248 | 8 | 80 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 178 | 183 | ERKRRE |
2 | 179 | 184 | RKRREK |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC238512 | 0.0 | AC238512.2 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence. |
GenBank | AC238928 | 0.0 | AC238928.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-79n4 map 1, complete sequence. |
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |