PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400008735 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bZIP | ||||||||
Protein Properties | Length: 141aa MW: 16751.9 Da PI: 8.5144 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.5 | 2.8e-13 | 55 | 112 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ rrk++NRe+ArrsR+RKk +e+ +e v+ L+a N++Lk++l + +++ +se PGSC0003DMP400008735 55 RKRRRKISNRESARRSRLRKKNHLENVTEQVDRLKAVNRDLKNRLWLATHRCQAAQSE 112 6789****************************************99999999987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.4E-11 | 51 | 115 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.6E-9 | 53 | 99 | No hit | No description |
PROSITE profile | PS50217 | 10.312 | 53 | 99 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.5E-10 | 55 | 107 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.27E-9 | 55 | 104 | No hit | No description |
CDD | cd14702 | 5.18E-13 | 56 | 107 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 58 | 73 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MMFEDPVHYH LPVLEDVFYS PSDFHDLFSF LETELPVQST SGSETNRLVF SLEERKRRRK 60 ISNRESARRS RLRKKNHLEN VTEQVDRLKA VNRDLKNRLW LATHRCQAAQ SETDRLRLES 120 FVLQQYLVEL HESLNSMQLH * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 58 | RKRRR |
2 | 67 | 73 | RRSRLRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400008735 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 1e-176 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028065855.1 | 8e-41 | basic leucine zipper 4-like | ||||
TrEMBL | M1A1G0 | 5e-97 | M1A1G0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400012575 | 8e-98 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2820 | 22 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 4e-20 | basic leucine-zipper 5 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400008735 |
Publications ? help Back to Top | |||
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