PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400008685

Common Name

LOC102587191

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 503aa MW: 56151 Da PI: 8.5978

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400008685	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.8e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PGSC0003DMP400008685 70 FFCEICNKGFQRDQNLQLHRRGH 92 67*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.8E-5	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.48E-6	69	92	No hit	No description
SMART	SM00355	0.044	70	92	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	2.6E-5	70	92	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.72	70	92	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	112	142	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.7E-4	135	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.48E-6	142	167	No hit	No description
SMART	SM00355	150	147	167	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MSIVTCEEAA ASLSSSSNMN NDTNGAFCYP PQHQLVTQQI KKKRNQPGNP DPEAEVIALS 60 PKTLVATNRF FCEICNKGFQ RDQNLQLHRR GHNLPWKLKK RENKEVVRKK VYICPESSCV 120 HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DCKAHFKTCG TREYKCECGT 180 IFSRRDSFIT HRAFCETLAM ESARSVINGR NPTIFSPQLN LQFQQPHFFN SHEQIQATTF 240 PMKKEQQSSD FRHIEIPPWL ITTNSQPFQL GAINHGPSPL SNFSSSSIFP ATTRLDQQYT 300 QSGHKDLNLH HPNPNLRGPT LGYDSTGESG AVSPVHISAT ALLQKAAQFG ATISNKASAV 360 TATVAYTGTV KIPHNTHVSV TSTDSATKQT HQKLSSREDL TTITGPANIS GIMTSFSNGF 420 DGSTMFEDAI LFGGFNNLNS KKEDEEEDQQ LYFNGSMNEE DHILTKDFLG LKPLSHTDDI 480 FNIAALVNTE PHHFKNHKTW QS*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MSIVTCEEAA ASLSSSSNMN NDTNGAFCYP PQHQLVTQQI KKKRNQPGNP DPEAEVIALS  60
PKTLVATNRF FCEICNKGFQ RDQNLQLHRR GHNLPWKLKK RENKEVVRKK VYICPESSCV  120
HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DCKAHFKTCG TREYKCECGT  180
IFSRRDSFIT HRAFCETLAM ESARSVINGR NPTIFSPQLN LQFQQPHFFN SHEQIQATTF  240
PMKKEQQSSD FRHIEIPPWL ITTNSQPFQL GAINHGPSPL SNFSSSSIFP ATTRLDQQYT  300
QSGHKDLNLH HPNPNLRGPT LGYDSTGESG AVSPVHISAT ALLQKAAQFG ATISNKASAV  360
TATVAYTGTV KIPHNTHVSV TSTDSATKQT HQKLSSREDL TTITGPANIS GIMTSFSNGF  420
DGSTMFEDAI LFGGFNNLNS KKEDEEEDQQ LYFNGSMNEE DHILTKDFLG LKPLSHTDDI  480
FNIAALVNTE PHHFKNHKTW QS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-30	143	204	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-30	143	204	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	109	KLKKRENKEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400008685

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X82328	0.0	X82328.1 S.tuberosum mRNA for DNA/RNA binding protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006357380.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
Refseq	XP_006357381.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like isoform X2
Swissprot	Q8H1F5	1e-110	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	M1A1B7	0.0	M1A1B7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400012504	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	8e-99	indeterminate(ID)-domain 11

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400008685
Entrez Gene	102587191

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] K A novel zinc finger protein encoded by a couch potato homologue from Solanum tuberosum enables a sucrose transport-deficient yeast strain to grow on sucrose. Mol. Gen. Genet., 1995. 247(6): p. 759-63 [PMID:7616968]