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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400008684 | ||||||||
Common Name | LOC102587191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 503aa MW: 56151 Da PI: 8.5978 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.8e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PGSC0003DMP400008684 70 FFCEICNKGFQRDQNLQLHRRGH 92 67*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.48E-6 | 69 | 92 | No hit | No description |
SMART | SM00355 | 0.044 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 2.6E-5 | 70 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.72 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.48E-6 | 142 | 167 | No hit | No description |
SMART | SM00355 | 150 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MSIVTCEEAA ASLSSSSNMN NDTNGAFCYP PQHQLVTQQI KKKRNQPGNP DPEAEVIALS 60 PKTLVATNRF FCEICNKGFQ RDQNLQLHRR GHNLPWKLKK RENKEVVRKK VYICPESSCV 120 HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DCKAHFKTCG TREYKCECGT 180 IFSRRDSFIT HRAFCETLAM ESARSVINGR NPTIFSPQLN LQFQQPHFFN SHEQIQATTF 240 PMKKEQQSSD FRHIEIPPWL ITTNSQPFQL GAINHGPSPL SNFSSSSIFP ATTRLDQQYT 300 QSGHKDLNLH HPNPNLRGPT LGYDSTGESG AVSPVHISAT ALLQKAAQFG ATISNKASAV 360 TATVAYTGTV KIPHNTHVSV TSTDSATKQT HQKLSSREDL TTITGPANIS GIMTSFSNGF 420 DGSTMFEDAI LFGGFNNLNS KKEDEEEDQQ LYFNGSMNEE DHILTKDFLG LKPLSHTDDI 480 FNIAALVNTE PHHFKNHKTW QS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-30 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 5e-30 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 109 | KLKKRENKEVVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400008684 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X82328 | 0.0 | X82328.1 S.tuberosum mRNA for DNA/RNA binding protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357380.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 | ||||
Refseq | XP_006357381.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like isoform X2 | ||||
Swissprot | Q8H1F5 | 1e-110 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | M1A1B7 | 0.0 | M1A1B7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400012504 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 8e-99 | indeterminate(ID)-domain 11 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400008684 |
Entrez Gene | 102587191 |
Publications ? help Back to Top | |||
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