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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400008672 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
bHLH |
Protein Properties |
Length: 391aa MW: 42992.8 Da PI: 5.9889 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400008672 | genome | PGSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 21.8 | 3.3e-07 | 294 | 334 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
rrRR++i +++ L++l+P ++ a++L +A +Y+k L
PGSC0003DMP400008672 294 ARRRREKISERIRILQKLVPGG-----SNMDTASMLDEAANYLKFL 334
59******************95.....48***************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 391 aa
Download sequence Send
to blast |
MNFQEFGAAF DPIDILSSWN ISQRQEAATR LAADSVAAKS GAGSIGDCTN SKIGSSSSFP 60 PRNNYLPYLG NNQVPICGLM ADVSSIGLFS KNRSPDCLLS ATNTSNTNTS GELDDVIFSD 120 DSESLWNIHT NNAVSSGESA IDAYKSKPID ANDNNNIHYS VNELDETVSC NNFITSSEGN 180 RYNMDKRSHN ALLESDSSNR DYVFQLISEN DQPKSKKSRS EYKLPSSSNI NFQQASSSAC 240 SIVDPDSEAI AQMKEMIYRA AAFRPVSSVR EDVMAEKPKR KNVRISMDPQ TATARRRREK 300 ISERIRILQK LVPGGSNMDT ASMLDEAANY LKFLRTQVNA LGAFGFNIDP SIINNNFTTS 360 LSSIPLINYP FPLQPHFPMQ NLNPIHHPKC *
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 278 | 297 | KRKNVRISMDPQTATARRRR |
2 | 294 | 299 | RRRREK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |