PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008359
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-other
Protein Properties Length: 509aa    MW: 57525.8 Da    PI: 8.2544
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008359genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.2e-182175357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                           R   t+ q+e Le+++e+++yp+++++ e A++lgLte+qV+ WF+ rR k+k+
  PGSC0003DMP400008359 21 ARILKTPAQIEGLEKFYEEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKR 75
                          68888************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-18475IPR009057Homeodomain-like
SuperFamilySSF466895.13E-161475IPR009057Homeodomain-like
PROSITE profilePS5007115.7261676IPR001356Homeobox domain
SMARTSM003893.2E-181880IPR001356Homeobox domain
CDDcd000861.32E-152075No hitNo description
PfamPF000461.9E-152175IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEDSREIHSE DDKGHVGKLK ARILKTPAQI EGLEKFYEEH KYPTESMKLE VAQSLGLTEK  60
QVSGWFCHRR LKDKRLLSRE TNAKGRQDRS SGVIQDRGSG FRQDSCGSTK QGDDKYFDHR  120
EVESRRLTGP EVSAADVTRE VDTMYRAESN LMEDTPSGSS SSLRDARFSK NVESFDMATS  180
KYLPGNEPTD LKYVKPRTGP SGYLKVKAKV ENASITAVKR QLGSVYRQDG PLLGVVFDLL  240
PRGAFESSVQ TPVDDPEYAG KPVPYLTPDF TKVDKQSNSC IRYGSISKTN SHGSDLDGAN  300
FKKSNKSGHP EYYINQKPGR NSSMHNGDRY YLERNSSIEM RKGSGREVAV DGRCNYKLMS  360
KHDGAEIKTS PGSSGGFRSS YSAKVNREQV TPRFTSRNCV SLEIAEEEDL ECKPSNFFQK  420
GSKHHYCPER ELPSKVEKDY IHVDRPTVDE DYNEDYNEDR VKIPWENEMR AAKRARDDEA  480
PNHQEDVRKA SVTRMPSQTN HQIRFGHV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008359
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349800.10.0PREDICTED: uncharacterized protein LOC102600158
TrEMBLM1A0J60.0M1A0J6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000120080.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34362242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.12e-63HB-other family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]