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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400008313 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 513aa MW: 58916.5 Da PI: 5.1483 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 283.5 | 6.1e-87 | 122 | 497 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsev 87 lve Ll+ Ae + ++ + a +lL++ +l+s++g+p++Rl+ yf +AL++r+ +++++ k l ++ + s ++++a ++ ++ PGSC0003DMP400008313 122 LVEHLLASAEKIGEKLFDSAINLLNECDKLSSKTGNPVERLVYYFSRALRERVDIeMGKNCTKGLGLHGMRDLQeSLRSINACTIAVQD 210 57899************************************************87799******977766654449999999999**** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAee 171 P+ ++ ++ qaI+e ve+++++Hi+D++i++G+QW L+qaLa+ ++ l++T++ + + s++++eetg+rL +fAe+ PGSC0003DMP400008313 211 MPMCQVVKFAGIQAIVENVENSKKIHIVDLEIKMGVQWTILMQALANDHqhnsqNPLEYLKVTALIDVQ--SRTNVEETGKRLMSFAES 297 **********************************************5444564444559********66..****************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 l+ p+ f++++++++ dl+ e+L+++p+E+laV +++ l ++ +++++ d ++ ++k++ P++++v+e ea++ns+ F++rf+ea PGSC0003DMP400008313 298 LHFPLCFKIVMVEDILDLKKEDLDIDPDESLAVYSQYLLSNMI----TQQDRLDFLMGFIKEMTPRIMIVAEVEANLNSPVFVNRFIEA 382 *************************************999998....555556779********************************* PP GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348 l y+ alfd +e + +++++r+ +E+ ++ i+n+va+eg+er++rh t e Wre ++++G++++++s++ qak++++k+ ++ PGSC0003DMP400008313 383 LFYHGALFDLFEDCMKSNESTRKAMEEDVMWHGIRNIVANEGEERTMRHVTIELWREYFKRFGMEEMKMSNSSLYQAKTVVEKFTgKNS 471 *************************************************************************************9999 PP GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374 +++e +++ +++gWk+ pL s+SaW+ PGSC0003DMP400008313 472 FTLEMNEKFVTIGWKGTPLNSLSAWK 497 *************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.411 | 96 | 476 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-84 | 122 | 497 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MQEQNEHDFV TFDDWGFDVE DETTTILHIK ETTDDNKKAK KSLISSLNIL KDYGNGFRKL 60 KGQKIDVVQI SENECTPSVC KLSTEEILRF GGQKFIQSTE FDHPFVNSLC SLSEEESRTV 120 MLVEHLLASA EKIGEKLFDS AINLLNECDK LSSKTGNPVE RLVYYFSRAL RERVDIEMGK 180 NCTKGLGLHG MRDLQESLRS INACTIAVQD MPMCQVVKFA GIQAIVENVE NSKKIHIVDL 240 EIKMGVQWTI LMQALANDHQ HNSQNPLEYL KVTALIDVQS RTNVEETGKR LMSFAESLHF 300 PLCFKIVMVE DILDLKKEDL DIDPDESLAV YSQYLLSNMI TQQDRLDFLM GFIKEMTPRI 360 MIVAEVEANL NSPVFVNRFI EALFYHGALF DLFEDCMKSN ESTRKAMEED VMWHGIRNIV 420 ANEGEERTMR HVTIELWREY FKRFGMEEMK MSNSSLYQAK TVVEKFTGKN SFTLEMNEKF 480 VTIGWKGTPL NSLSAWKFHK TSTFHRANYL TL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-38 | 152 | 497 | 33 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400008313 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349956.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | M1A0F9 | 0.0 | M1A0F9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400011954 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3427 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-41 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400008313 |
Publications ? help Back to Top | |||
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