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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400008226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 448aa MW: 50346.7 Da PI: 6.7463 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 478.7 | 3e-146 | 26 | 444 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lLl+cA++v++g+le+a+ +L ++s+lasp+gd+mqR+a+yfteALa r++rs+++lykal++++ s +see+ ++k+f+e++P PGSC0003DMP400008226 26 LIHLLLACANHVAAGSLENANIALDHISQLASPSGDTMQRIASYFTEALADRILRSWPGLYKALRSTKLS--VVSEEILVRKMFFEIFP 112 689*************************************************************999998..6**************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +lk++++++NqaI ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lRiTgv++ +ke l ++++ L++ Ae+l++pf+f PGSC0003DMP400008226 113 FLKVAFVVTNQAIIEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLDQMAHVLTQEAEKLDIPFQF 197 ************************************************************....9************************ PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................................................... 214 n v++rle+l++e+Lrvk+gEala+++v+qlh+ll PGSC0003DMP400008226 198 NQ-VVSRLENLDVEKLRVKTGEALAISSVMQLHTLLahdnekksplpskhsngvnlhralvnqntlgeflekdmangcspsndtasssp 285 **.7******************************************************************************9988655 PP GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302 +++s+ ++d++L+++++lsPkv+vv+eq+++hn+++++er++e+l++y+alfd+le++lpr+s er kvE++llg+ei+n++aceg PGSC0003DMP400008226 286 lCSTGST--KIDSFLNALWGLSPKVMVVTEQDSNHNGTTLMERLSESLHFYAALFDCLESTLPRTSLERLKVEKMLLGEEIRNIIACEG 372 4444444..459***************************************************************************** PP GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 er+erhe+lekW +r++++GF++vpls++a+ qa++ll+ ++ +gy+++ee+g++v++W+dr+L+svS+Wr PGSC0003DMP400008226 373 IERKERHEKLEKWFQRFDTSGFGNVPLSYYAMLQARRLLQSYSCEGYKIKEENGCVVICWQDRALFSVSSWR 444 ***********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.962 | 1 | 424 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-143 | 26 | 444 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MSVSPSFGSS NQWLKELKSE ERGLYLIHLL LACANHVAAG SLENANIALD HISQLASPSG 60 DTMQRIASYF TEALADRILR SWPGLYKALR STKLSVVSEE ILVRKMFFEI FPFLKVAFVV 120 TNQAIIEAME GEKMVHIVDL NAAEPLQWRA LLQDLSARPE GPPHLRITGV HQQKEVLDQM 180 AHVLTQEAEK LDIPFQFNQV VSRLENLDVE KLRVKTGEAL AISSVMQLHT LLAHDNEKKS 240 PLPSKHSNGV NLHRALVNQN TLGEFLEKDM ANGCSPSNDT ASSSPLCSTG STKIDSFLNA 300 LWGLSPKVMV VTEQDSNHNG TTLMERLSES LHFYAALFDC LESTLPRTSL ERLKVEKMLL 360 GEEIRNIIAC EGIERKERHE KLEKWFQRFD TSGFGNVPLS YYAMLQARRL LQSYSCEGYK 420 IKEENGCVVI CWQDRALFSV SSWRCRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-41 | 8 | 446 | 1 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400008226 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349782.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | M1A098 | 0.0 | M1A098_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1A099 | 0.0 | M1A099_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400011839 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400008226 |
Publications ? help Back to Top | |||
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