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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400007398 |
Common Name | LOC102594498 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
LBD |
Protein Properties |
Length: 174aa MW: 19573.2 Da PI: 5.9918 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400007398 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 135.3 | 2.3e-42 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l+++pe++r da++s+vyeA+ar+rdPvyG++++i +lq+q+++
PGSC0003DMP400007398 13 PCAACKILRRRCVEKCVLAPYFPPTHPLKFTIAHRVFGASNIIKMLQEVPEDQRADAVNSMVYEANARIRDPVYGCTAIICQLQKQISE 101
7**************************************************************************************** PP
DUF260 90 lkaelallkee 100
l+a+l++++ e
PGSC0003DMP400007398 102 LQADLVKAQVE 112
*****999865 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 174 aa
Download sequence Send
to blast |
MEDKSEYSCP HHPCAACKIL RRRCVEKCVL APYFPPTHPL KFTIAHRVFG ASNIIKMLQE 60 VPEDQRADAV NSMVYEANAR IRDPVYGCTA IICQLQKQIS ELQADLVKAQ VEIMNVQTQN 120 TNLVALICTE MTQNQENNNS TTTESPDHQQ AYGNSNTSLE DNNVYAPWKS LWT*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975443 | 1e-114 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |