PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007305
Common NameLOC102606395
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 253aa    MW: 28630 Da    PI: 4.6918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007305genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-135395754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                            Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI +L
  PGSC0003DMP400007305 53 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIEEL 95
                          57*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-1745110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2284695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-1149100No hitNo description
SMARTSM003533.3E-1452101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1652111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-105395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.87E-5174238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDNIGDEYKN YWETTMFLQS EELDSYFDEP ISSYYDSSSP DGSQSSMASK NIVSERNRRK  60
KLNERLFALR AVVPNISKMD KASIIKDAID YIEELHKQER RIRGEISELE SGRSSKKNST  120
DLEFEQDESF DSKPKRSRRF EMQYGYDSSG STTRSPPSSS PVDVLELRVS SMGEKTVVVS  180
LTCSKRTDTM VKVCEVFESL NIKIISANIT AFSGRLLKTA FIEADEEERD LLKLRIETAI  240
ASLNDPDSPM SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007305
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536451e-123AC253645.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence.
GenBankHG9754461e-123HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-123HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344525.10.0PREDICTED: transcription factor bHLH35
SwissprotQ2HIV98e-85BH035_ARATH; Transcription factor bHLH35
TrEMBLM0ZY400.0M0ZY40_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000104630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-74bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]