PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007294
Common NameLOC102604765
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 306aa    MW: 34005.5 Da    PI: 8.6403
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007294genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.11.6e-30621783115
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg 88 
                           g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ + k +i++l+ ++ +++s +   + ++++      s++
  PGSC0003DMP400007294  62 GGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATKDEIDKLPPLQIPPPSLShffNMKDHHLDFVDTSET 150
                           78*************************************************************88888333445333333333333333 PP

                   TCP  89 kaaksaa.kskksqksaasalnlakesr 115
                              k++   +++ +++++s++n+ ++s+
  PGSC0003DMP400007294 151 GFGKEKWiATNDHDHQESSNHNFFQSSN 178
                           2233333355555555555566655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-2763163IPR005333Transcription factor, TCP
PROSITE profilePS5136929.4463121IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MNTKKQETGG GDTNNSKTSS RTTISTTTCT ATTPSSTCSR QSSSWAAGFK NPRIVRVSRT  60
FGGKDRHSKV CTVKGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVVDWL IDATKDEIDK  120
LPPLQIPPPS LSHFFNMKDH HLDFVDTSET GFGKEKWIAT NDHDHQESSN HNFFQSSNLG  180
MLNTFNNSTN NALISHNWEL PNSNLSLGPF GNYQDQYQQQ NMPFPSGSHH QHQQLYFCPS  240
SSTTSATTLS SLVPPYNSHF HQNSLTPTLQ LISVPVKSSF SLNDNNKGIN LQDHHQHNHK  300
EGSGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2068122155Putative transcription factor PCF6
5zkt_B4e-2068122155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-165HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354751.10.0PREDICTED: transcription factor TCP5-like
TrEMBLM0ZY340.0M0ZY34_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000104530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-44TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]