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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PGSC0003DMP400007152 |
| Common Name | LOC102578586 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
bHLH |
| Protein Properties |
Length: 377aa MW: 41285.8 Da PI: 4.8092 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400007152 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 50 | 5.2e-16 | 151 | 197 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn E+rRR+riN+++ L++l+P++ K +Ka++L +A+eY+k+Lq
PGSC0003DMP400007152 151 VHNLSEKRRRSRINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 197
6*************************7.....5******************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0007623 | Biological Process | circadian rhythm |
| GO:0009409 | Biological Process | response to cold |
| GO:0010114 | Biological Process | response to red light |
| GO:0010154 | Biological Process | fruit development |
| GO:0010187 | Biological Process | negative regulation of seed germination |
| GO:0048440 | Biological Process | carpel development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 377 aa
Download sequence Send
to blast |
MANNNVYHNS ANIASFSLTD PDPDPDPEPD DISVFLRHIL LPSSSSSSSN LMALKGNEMQ 60
YSSPSPHLMP NNNQQGDLSS MMNSSAGGIF SSSYGAYNGA TNVSSSSVGT MDNDPDEYEC 120
ESEDGTEDLG AEASVQPPSR NTSKRSRAAE VHNLSEKRRR SRINEKMKAL QKLIPNSNKT 180
DKASMLDEAI EYLKQLQLQV QMLTMRNGLN MYPLGLPRML QQNQLSQQKI GLCEGNGFTN 240
AKVAGNLQVN QDASLSAIFN PTENCTETKL TPLVTMSNVN HSDGAFEPES SMNTHLDPFQ 300
LSRSTSKEIW REDGLPMYGM NERTTKTASV GANVAFSVPI DTDASNLKRN TREACLLRYQ 360
FGAMNETNLD YTRALP*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975441 | 1e-129 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants.
Front Plant Sci, 2014. 5: p. 300
[PMID:25018763] - Moubayidin L,Ostergaard L
Dynamic control of auxin distribution imposes a bilateral-to-radial symmetry switch during gynoecium development.
Curr. Biol., 2014. 24(22): p. 2743-8
[PMID:25455035] - Pfannebecker KC,Lange M,Rupp O,Becker A
Seed Plant-Specific Gene Lineages Involved in Carpel Development.
Mol. Biol. Evol., 2017. 34(4): p. 925-942
[PMID:28087776] - Zumajo-Cardona C,Ambrose BA,Pabón-Mora N
Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae).
Evodevo, 2017. 8: p. 5
[PMID:28331573] - Reyes-Olalde JI, et al.
The bHLH transcription factor SPATULA enables cytokinin signaling, and both activate auxin biosynthesis and transport genes at the medial domain of the gynoecium.
PLoS Genet., 2017. 13(4): p. e1006726
[PMID:28388635] - Wu M, et al.
SPATULA regulates floral transition and photomorphogenesis in a PHYTOCHROME B-dependent manner in Arabidopsis.
Biochem. Biophys. Res. Commun., 2018. 503(4): p. 2380-2385
[PMID:29966653]
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