PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006878
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 299aa    MW: 33471.9 Da    PI: 7.1894
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006878genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031117139123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C++sF++   L  H  +H
  PGSC0003DMP400006878 117 YQCKTCNRSFPSFQALGGHRASH 139
                           9***********99999998887 PP
2zf-C2H213.30.00024199221123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg  F++   L  H+r+H
  PGSC0003DMP400006878 199 HECSICGAEFTSGQALGGHMRRH 221
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.85E-9116139No hitNo description
PfamPF139128.1E-13116141IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429117144IPR007087Zinc finger, C2H2
SMARTSM003550.03117139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SuperFamilySSF576675.85E-9194221No hitNo description
PfamPF139121.0E-12198222IPR007087Zinc finger, C2H2
SMARTSM003550.01199221IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723199221IPR007087Zinc finger, C2H2
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEVHDDRDHD QDQDQQLNMV IKRRRTKRPR PPSPLTLGIT TSSCSTVEGA SSGELVDGHV  60
ANSSSRLNNC GGMIDDKIVR NTNQEEEDMA NCLILLAQGH NYQKSSSLSQ SPTLDVYQCK  120
TCNRSFPSFQ ALGGHRASHK KPKILDDQIK NSKSSDHHQQ VENNIRLKLN NNDDHVTTLS  180
LQMPSNNNNN NNKNKNRVHE CSICGAEFTS GQALGGHMRR HRPLPNSIAI ASNHHIHEES  240
DSHHHDQQIK NNTRTFLSLD LNLPAPEDDH RPENSKFTFA TKEQVIVFSA SPLVDCHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12630KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006878
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354388.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLM0ZX270.0M0ZX27_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000098710.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-48C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]