PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006630
Common NameBBR/BPC3
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family BBR-BPC
Protein Properties Length: 324aa    MW: 36127.1 Da    PI: 10.1587
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006630genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind379.65.2e-11613231301
             GAGA_bind   1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82 
                           mdd+g+r+  r+k+ + +   ++ +s+k     q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erdn+++
  PGSC0003DMP400006630   1 MDDSGNRDngRHKPpQGQwlmQHqPSMK-----QIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIA 84 
                           8999987777877732222222234444.....******************************************************** PP

             GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
                           +l+++en+      +g q+++g+k++++ qq +++ p++++++++ re++++ea p++  a+e  + +++k   rak+pk+ + +kk+ 
  PGSC0003DMP400006630  85 TLQYRENA-----MTGGQIVRGVKHMHHPQQhVHHqPHMGEPTYNPREMHMVEAIPVSPPAPEPAKPRRNK---RAKEPKAVTGSKKTP 165
                           ******98.....45788************9644469*******************999887766666555...555555444433333 PP

             GAGA_bind 170 ksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGG 229
                           k     kkvk+e++d +                             sk ++k++dl+ln+v++De+t+PvPvCsCtG+lr CYkWGnGG
  PGSC0003DMP400006630 166 KA---SKKVKRETEDLNqttygkspewkgaqemvgasddlnrqlavSKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGG 251
                           22...2223333322111345566789999*********************************************************** PP

             GAGA_bind 230 WqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           WqS+CCtt++S+yPLP+++++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+ WAkHGtn+++ti+
  PGSC0003DMP400006630 252 WQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK 323
                           ***********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.9E-1051323IPR010409GAGA-binding transcriptional activator
SMARTSM012261.3E-1631323IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDDSGNRDNG RHKPPQGQWL MQHQPSMKQI MAIMAERDAA IQERNLALSE KKAALAERDM  60
AILQRDSAIA ERNNAIMERD NAIATLQYRE NAMTGGQIVR GVKHMHHPQQ HVHHQPHMGE  120
PTYNPREMHM VEAIPVSPPA PEPAKPRRNK RAKEPKAVTG SKKTPKASKK VKRETEDLNQ  180
TTYGKSPEWK GAQEMVGASD DLNRQLAVSK PDWKDQDLGL NQVAFDETTM PVPVCSCTGV  240
LRPCYKWGNG GWQSSCCTTN LSMYPLPAVP NKRHARIGGR KMSGSAFTKL LSRLAAEGHD  300
LSNPVDLKNN WAKHGTNRYI TIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823140.0FJ982314.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275364.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_006342016.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_006342018.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_015161877.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
SwissprotQ8L9991e-141BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLH1ZN970.0H1ZN97_SOLTU; GAGA-binding transcriptional activator
STRINGPGSC0003DMT4000095340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-117basic pentacysteine 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]