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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PGSC0003DMP400006619 |
| Common Name | LOC102582815 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
DBB |
| Protein Properties |
Length: 299aa MW: 33203.3 Da PI: 7.1229 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400006619 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 22.1 | 3.2e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
C+ ++++e++ fC ++ lC++C H+ H+
PGSC0003DMP400006619 4 QCDVCNNNEASVFCVADEAALCDSCDHRVHHAnklaskHQ 43
7***************************964446666676 PP
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| 2 | zf-B_box | 29.1 | 2e-09 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
+ ++C+ ++e ++ lfC++++ lC++C +++Hk Ht
PGSC0003DMP400006619 54 QIPVCDICQERRAFLFCQQDRAILCRECDVSIHKAneHT 92
6789*****************************878865 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MKIQCDVCNN NEASVFCVAD EAALCDSCDH RVHHANKLAS KHQRFSLIQP SPKQIPVCDI 60
CQERRAFLFC QQDRAILCRE CDVSIHKANE HTQKHNRFLL TGVKISANSS LYTSSESASA 120
TSCSANQDSV TNLNKSQTCT KKTLPVSGSV PQQVSVAVNI GENSYTSSIS EYLEMLPGWH 180
VEELLNSSTI PTNGFCKIGD NDVFPIWDTE IESTMNSFSP ENLGIWVPQA PPPPTPQKNQ 240
NQVFPQNINF GGQIEFKNMK EVTSNKSSRK WRDDNSFAVP QIIPSSSSIS FKRSRTLW*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
| Publications
? help Back to Top |
- Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Xu D, et al.
BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
[PMID:27325768] - Xu DB, et al.
The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis.
Mol Plant, 2017. 10(9): p. 1206-1223
[PMID:28827171] - Xu D,Jiang Y,Li J,Holm M,Deng XW
The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
Plant Physiol., 2018. 176(3): p. 2365-2375
[PMID:29259103] - Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
Plant Physiol., 2018. 176(4): p. 2963-2976
[PMID:29439209] - Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
Plant Physiol., 2018. 177(1): p. 369-380
[PMID:29555784] - Kang X, et al.
HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
Plant Cell Environ., 2018. 41(8): p. 1912-1925
[PMID:29748960]
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