PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006433
Common NameLOC102582802
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 76aa    MW: 8624.69 Da    PI: 7.7699
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006433genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.9e-11851344
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          +WT+ E +++ +a + + ++   +W  Iar++g g++ +++k+++
  PGSC0003DMP400006433  8 AWTPIENKKFEQALAVYDKDtsdRWQNIARYVG-GKSVEEVKHHY 51
                          7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.915459IPR017884SANT domain
SMARTSM007176.8E-9557IPR001005SANT/Myb domain
PfamPF002493.0E-9851IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-5852IPR009057Homeodomain-like
CDDcd001675.83E-9851No hitNo description
SuperFamilySSF466898.22E-13862IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MTSNSLTAWT PIENKKFEQA LAVYDKDTSD RWQNIARYVG GKSVEEVKHH YAILVEDLKH  60
IESGDVPFPK YKSGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-28273475RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006433
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340632.11e-50PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1736e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3Q7F9L25e-45A0A3Q7F9L2_SOLLC; Uncharacterized protein
TrEMBLM0ZVX43e-49M0ZVX4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000092775e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-31RAD-like 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]