 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400006325 |
| Common Name | LOC102603672 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
GATA |
| Protein Properties |
Length: 340aa MW: 36693 Da PI: 6.7679 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400006325 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 58.1 | 1.2e-18 | 260 | 294 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
PGSC0003DMP400006325 260 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 294
*******************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MDCVKGALRN SFVPETPLKM TQNQTFGDDL SAAGAGQNGV SGDDFFVDDL LDFSNGFVEG 60
EGEEEEGKNQ GGEDISVQKP CSVSISVSPL KKTEIDDKDK VTISVKEDFS SLPVSEISVP 120
TDDLDSLEWL SHFVEDSFSG YSLAYPAGKL EVEKKTGDGE IPVEEKKPCF ATPVQTKART 180
KRGRTSVRFW PACSGSLTDS SSSSTSSSST TTMSSSPTAS WFLYPTPVHS AESPGKPLAK 240
KLKKKPAPHG GNGPQQPRRC SHCGVQKTPQ WRAGPMGAKT LCNACGVRFK SGRLLPEYRP 300
ACSPTFSTEL HSNNHRKVLE MRRKKESEET GLAQPVQSF*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215358 | 0.0 | AC215358.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0023N04, complete sequence. |
| GenBank | AC215492 | 0.0 | AC215492.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0128E12, complete sequence. |
| GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
