PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

DBB

Protein Properties

Length: 213aa MW: 23536.7 Da PI: 6.0836

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400005593	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.3	1.3e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC++C ++ H PGSC0003DMP400005593 4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33 7**************************998 PP
2	zf-B_box	25.7	2.4e-08	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H PGSC0003DMP400005593 52 KIQRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91 6689**************************9995544455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.21	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.2E-8	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.4E-6	3	41	IPR000315	B-box-type zinc finger
CDD	cd00021	5.08E-7	3	45	No hit	No description
SMART	SM00336	3.2E-9	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.214	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.6E-6	52	85	IPR000315	B-box-type zinc finger
CDD	cd00021	8.57E-7	55	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SKIQRCDICE 60 NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLIRQR IEFPGDKLGP SNELGFPSTE 120 QGDVRREPAL PFKLPMIDNH QPNRETAMAA VENNVNNSVK MENELIDLNS RPHRMHGQTS 180 NNQEQGMDML GGSNHESVGV VPDGPFKREP EK*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400005593

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC239650	1e-111	AC239650.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-23c6 map 1, complete sequence.
GenBank	HG975513	1e-111	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361997.1	1e-158	PREDICTED: B-box zinc finger protein 19-like
Swissprot	C0SVM5	4e-82	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	M0ZTY8	1e-156	M0ZTY8_SOLTU; B-box zinc finger protein 21
STRING	PGSC0003DMT400008044	1e-157	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3175	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	2e-84	DBB family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400005593
Entrez Gene	102578169

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]