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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400005474 | ||||||||
Common Name | LOC102579355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 680aa MW: 75421.9 Da PI: 6.0812 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 426.1 | 2.8e-130 | 297 | 664 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lL++c+ea+ s++ + +++l+arl +lasp+g+p+ Rl+ayfteALa r+ar ++++++++pp++ + + +++ +al+l+++vsP PGSC0003DMP400005474 297 LISLLVSCVEAIGSRNVTGVNQLIARLGQLASPRGSPVSRLTAYFTEALALRVARIWPHIFHIIPPRDLD-RLDDDSSTALRLLNQVSP 384 5799****************************************************************98.5678888999******** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 i+kf h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+ sk+ l etg+rLa+fAe+l++ fef PGSC0003DMP400005474 385 IPKFIHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPNPPTHVRITGIGE----SKQDLVETGDRLAEFAEALNLAFEF 469 ************************************************************....9************************ PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 ++ v++rled++l++L+vk+gE++aVn+vlq+hrll +s +++L l++s++P+++ ++eqea+hn++s+ +r++++l+yy+a+ PGSC0003DMP400005474 470 HP-VVDRLEDVRLWMLHVKEGESVAVNCVLQMHRLLYDSSGGIL--RDFLGLIRSTNPTIILMAEQEAEHNEPSLEARLVNSLRYYAAV 555 **.7*******************************966655444..79***************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...e 353 fds+ +lp +s +rik+E+ ++r+i+n++aceg++r+erhe ++kWr+ +e+ GF+ ++e++ q ++ll++++ + yrv + PGSC0003DMP400005474 556 FDSIGFSLPLDSPARIKIEEL-FARDIRNIIACEGRDRTERHECFGKWRKLMEQGGFRCTGITERELFQSQMLLKMYSCEDYRVTkqgN 643 *******************98.********************************************************888***94445 PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 ++++l+l W d+pL +vSaW+ PGSC0003DMP400005474 644 DDAALTLSWLDQPLCTVSAWT 664 589999**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.139 | 271 | 641 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.6E-128 | 297 | 664 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MLAGCSSSLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDTSR SQSISRPVGL 60 SVEKPIEAKN STCSLKQNIR LPPSSTSAQT SYVEGRRESK DEFWEKGRSL KRYAEQGCID 120 DESCMSRAKR KKGNRKSGDC SEDGYDLSLS QLGGGDFWLQ SGFNAARSVP LIAGLHPPQA 180 APFSFSCSGE EESVCYVPNE VISPPLPMSN NPWIESVVTE ITSFGDKNVS TSQDLAREAS 240 VSSASLDSHG LVLRPNENPG EHEIGNGSRL PNPNDRGEVV TAHNGHNNHR EDDAAELISL 300 LVSCVEAIGS RNVTGVNQLI ARLGQLASPR GSPVSRLTAY FTEALALRVA RIWPHIFHII 360 PPRDLDRLDD DSSTALRLLN QVSPIPKFIH FTSNEILLRA FEGKDRVHII DFDIKQGLQW 420 PSLFQSLASR PNPPTHVRIT GIGESKQDLV ETGDRLAEFA EALNLAFEFH PVVDRLEDVR 480 LWMLHVKEGE SVAVNCVLQM HRLLYDSSGG ILRDFLGLIR STNPTIILMA EQEAEHNEPS 540 LEARLVNSLR YYAAVFDSIG FSLPLDSPAR IKIEELFARD IRNIIACEGR DRTERHECFG 600 KWRKLMEQGG FRCTGITERE LFQSQMLLKM YSCEDYRVTK QGNDDAALTL SWLDQPLCTV 660 SAWTPIDAAG SSSSYYQPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-74 | 304 | 665 | 26 | 380 | Protein SCARECROW |
5b3h_A | 2e-74 | 304 | 665 | 25 | 379 | Protein SCARECROW |
5b3h_D | 2e-74 | 304 | 665 | 25 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400005474 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009279 | 0.0 | AP009279.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0197J17, complete sequence. | |||
GenBank | AP010263 | 0.0 | AP010263.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0019C20, complete sequence. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358871.1 | 0.0 | PREDICTED: scarecrow-like protein 28 | ||||
Swissprot | Q9CAN3 | 0.0 | SCL28_ARATH; Scarecrow-like protein 28 | ||||
TrEMBL | M0ZTN8 | 0.0 | M0ZTN8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400007879 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5568 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400005474 |
Entrez Gene | 102579355 |
Publications ? help Back to Top | |||
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