 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
PGSC0003DMP400004825 |
Common Name | LOC107059499 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
Family |
HD-ZIP |
Protein Properties |
Length: 244aa MW: 28275.8 Da PI: 8.3764 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400004825 | genome | PGSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62.2 | 7.7e-20 | 70 | 122 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k
PGSC0003DMP400004825 70 KKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 122
55699***********************************************9 PP
|
2 | HD-ZIP_I/II | 120.1 | 1.1e-38 | 69 | 160 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
kk+rls++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+ yd +++e+++L++ev +Lr+
PGSC0003DMP400004825 69 KKKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQDYDVVSREKQKLQDEVLALRAI 157
9**************************************************************************************88 PP
HD-ZIP_I/II 91 lke 93
lke
PGSC0003DMP400004825 158 LKE 160
875 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009965 | Biological Process | leaf morphogenesis |
GO:0010434 | Biological Process | bract formation |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MDWNGNIRPF VSRPVIDNSL NFLYNYNYDQ YQGMEMKHAM QTQHGGVQVP TMDNNNNNNF 60 VLNQHQLDKK KRLSSDQLES LENSFQEEIK LDPDRKMKLA KELGLQPRQI AVWFQNRRAR 120 WKAKQLERLY DSLKQDYDVV SREKQKLQDE VLALRAILKE QATKKQVNST VYTEISGEET 180 VESTSMPSSN KTITRGITIS NHQNNNNIMN NNNIAECSYV FNNVVDGLNP VMPPYWATLP 240 TYP*
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 116 | 124 | RRARWKAKQ |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG975521 | 1e-179 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |