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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PGSC0003DMP400004700 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
HD-ZIP |
Protein Properties |
Length: 767aa MW: 85240 Da PI: 6.6254 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400004700 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 65.9 | 5.4e-21 | 113 | 168 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r+k +++t +q++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k
PGSC0003DMP400004700 113 RKKYHRHTVQQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 168
7999************************************************9877 PP
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2 | START | 197.5 | 6.1e-62 | 287 | 503 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79
++a+++l k+a+++ep+W ks e++n+de++++f++++v +ea+r++g+v+m+l++lv++++d++ qW e+++ ka
PGSC0003DMP400004700 287 VNQAMEQLTKMATSGEPLWIKSFetgrEILNYDEYTKEFPPGDVkskrMCIEASRDTGIVFMELPRLVQTFMDVN-QWREMFPsiisKA 374
5789******************99********************999999*************************.************* PP
EEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
START 80 etlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
+t++vi++g ga a +l+p+v R+++fvRy++q++a +w ivdvSvd + ++s+ ++++lpSg+++++ sn h+kvt
PGSC0003DMP400004700 375 ATVDVICNGteGANSWDGAVQLMLTPVVGtREVYFVRYCKQMSAAQWGIVDVSVDKVEGSI-DASLLKCRKLPSGCILQEQSNAHCKVT 462
**********98889999999999***********************************87.9************************** PP
EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
wveh +++++++++l+r++v+sg+a+ga++w+atlq+qce+
PGSC0003DMP400004700 463 WVEHLECQKSIVDSLYRVTVNSGQAFGARRWMATLQQQCER 503
***************************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009957 | Biological Process | epidermal cell fate specification |
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification |
GO:0005634 | Cellular Component | nucleus |
GO:0008289 | Molecular Function | lipid binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 767 aa
Download sequence Send
to blast |
MVVVDMSNNH PPSHETKDFF PSPALSLSLA GIFRDGGGAG SSAGNMETTE EVDEGSAAAS 60 RGGRPREETS TVEISSENSE QMRSRGSDDD LEHDDTCNED EEDPNNNSKK KKRKKYHRHT 120 VQQIREMEAL FKESPHPDEK QRQQLSKQLG LHPRQVKFWF QNRRTQIKAI QERHENSLLK 180 AEIEKLREEN KGLRGTSKNP SCPNCGFASS SNNAPTLPAE EQQLRIENAR LRAEVEKLRA 240 ALGKYPLGTS PNSSSSCSGG NDEENKSALD FYTGIFGLEK PRIMHIVNQA MEQLTKMATS 300 GEPLWIKSFE TGREILNYDE YTKEFPPGDV KSKRMCIEAS RDTGIVFMEL PRLVQTFMDV 360 NQWREMFPSI ISKAATVDVI CNGTEGANSW DGAVQLMLTP VVGTREVYFV RYCKQMSAAQ 420 WGIVDVSVDK VEGSIDASLL KCRKLPSGCI LQEQSNAHCK VTWVEHLECQ KSIVDSLYRV 480 TVNSGQAFGA RRWMATLQQQ CERLLFFMAT NIPTKDTTGV ATLAGRKSIL TLAQRMTWGF 540 YRVLGASSYN TWNKVPSKTG QEDIRMTSRR NLTDPGEPQG LILCAVSSIW LPVSRNVLFD 600 FLKDENHRHE WDVMSNGGPV QSVANLAKGQ DKGNAVSIQA VKLRENNMWI LQDTCTNAYE 660 SAVVYAPVDI AGMQSVITGC DSSNIAVLPS GFSILPDGLE SRPFVITSRP EDRSSEGGSL 720 LTVAFQILTS NSPTTKLSKE SVESINNLLS CTLHKIKTRF QCDNGY*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 108 | 113 | KKKKRK |
2 | 108 | 114 | KKKKRKK |
3 | 110 | 114 | KKRKK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975515 | 1e-176 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |