PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 767aa    MW: 85240 Da    PI: 6.6254
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004700genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.4e-21113168156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           r+k +++t +q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  PGSC0003DMP400004700 113 RKKYHRHTVQQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 168
                           7999************************************************9877 PP

2START197.56.1e-622875033206
                           HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
                 START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                            ++a+++l k+a+++ep+W ks     e++n+de++++f++++v      +ea+r++g+v+m+l++lv++++d++ qW e+++    ka
  PGSC0003DMP400004700 287 VNQAMEQLTKMATSGEPLWIKSFetgrEILNYDEYTKEFPPGDVkskrMCIEASRDTGIVFMELPRLVQTFMDVN-QWREMFPsiisKA 374
                           5789******************99********************999999*************************.************* PP

                           EEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
                 START  80 etlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                           +t++vi++g  ga     a   +l+p+v  R+++fvRy++q++a +w ivdvSvd  +    ++s+ ++++lpSg+++++ sn h+kvt
  PGSC0003DMP400004700 375 ATVDVICNGteGANSWDGAVQLMLTPVVGtREVYFVRYCKQMSAAQWGIVDVSVDKVEGSI-DASLLKCRKLPSGCILQEQSNAHCKVT 462
                           **********98889999999999***********************************87.9************************** PP

                           EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                           wveh +++++++++l+r++v+sg+a+ga++w+atlq+qce+
  PGSC0003DMP400004700 463 WVEHLECQKSIVDSLYRVTVNSGQAFGARRWMATLQQQCER 503
                           ***************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-2297164IPR009057Homeodomain-like
SuperFamilySSF466899.61E-2198171IPR009057Homeodomain-like
PROSITE profilePS5007117.799110170IPR001356Homeobox domain
SMARTSM003891.9E-18112174IPR001356Homeobox domain
PfamPF000462.7E-18113168IPR001356Homeobox domain
CDDcd000862.12E-16117168No hitNo description
PROSITE patternPS000270145168IPR017970Homeobox, conserved site
PROSITE profilePS5084834.772276506IPR002913START domain
SuperFamilySSF559617.0E-28278503No hitNo description
CDDcd088751.24E-98280502No hitNo description
SMARTSM002341.9E-55285503IPR002913START domain
PfamPF018521.5E-49287503IPR002913START domain
SuperFamilySSF559611.92E-12546754No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MVVVDMSNNH PPSHETKDFF PSPALSLSLA GIFRDGGGAG SSAGNMETTE EVDEGSAAAS  60
RGGRPREETS TVEISSENSE QMRSRGSDDD LEHDDTCNED EEDPNNNSKK KKRKKYHRHT  120
VQQIREMEAL FKESPHPDEK QRQQLSKQLG LHPRQVKFWF QNRRTQIKAI QERHENSLLK  180
AEIEKLREEN KGLRGTSKNP SCPNCGFASS SNNAPTLPAE EQQLRIENAR LRAEVEKLRA  240
ALGKYPLGTS PNSSSSCSGG NDEENKSALD FYTGIFGLEK PRIMHIVNQA MEQLTKMATS  300
GEPLWIKSFE TGREILNYDE YTKEFPPGDV KSKRMCIEAS RDTGIVFMEL PRLVQTFMDV  360
NQWREMFPSI ISKAATVDVI CNGTEGANSW DGAVQLMLTP VVGTREVYFV RYCKQMSAAQ  420
WGIVDVSVDK VEGSIDASLL KCRKLPSGCI LQEQSNAHCK VTWVEHLECQ KSIVDSLYRV  480
TVNSGQAFGA RRWMATLQQQ CERLLFFMAT NIPTKDTTGV ATLAGRKSIL TLAQRMTWGF  540
YRVLGASSYN TWNKVPSKTG QEDIRMTSRR NLTDPGEPQG LILCAVSSIW LPVSRNVLFD  600
FLKDENHRHE WDVMSNGGPV QSVANLAKGQ DKGNAVSIQA VKLRENNMWI LQDTCTNAYE  660
SAVVYAPVDI AGMQSVITGC DSSNIAVLPS GFSILPDGLE SRPFVITSRP EDRSSEGGSL  720
LTVAFQILTS NSPTTKLSKE SVESINNLLS CTLHKIKTRF QCDNGY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113KKKKRK
2108114KKKKRKK
3110114KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004700
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-176HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343080.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLM0ZRY40.0M0ZRY4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000067700.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]