PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GATA

Protein Properties

Length: 352aa MW: 38139.9 Da PI: 6.6927

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400004491	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.8	2.6e-17	240	274	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l PGSC0003DMP400004491 240 CLHCASDKTPQWRTGPLGPKTLCNACGVRYKSGRL 274 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	7.4E-79	6	328	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	12.374	234	270	IPR000679	Zinc finger, GATA-type
SMART	SM00401	4.8E-15	234	284	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.1E-13	236	271	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.71E-14	236	297	No hit	No description
CDD	cd00202	1.53E-13	239	286	No hit	No description
PROSITE pattern	PS00344	0	240	265	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	3.1E-15	240	274	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MEASDLFVSG FFSHAGDEQI PNNINNNNNC NNFSVDDLLV IPKEDEVMAD AFFNNITGNS 60 TDSSTVTVVD SCNSSVSGGD GQFNGNLSGR SFTDAPFPNS ELCVPFDDLA ELEWLSNFVE 120 ESFSSDDVQN LQFIPVANIN SSTITTDSSS SATTFSTGPN SPPAFPTDTS VPGKARSKRS 180 RAAPCDWSSR LQLLLSPATS SSESNSISPP SANNTTFATA KATKAPSKKR ESVETPGRKC 240 LHCASDKTPQ WRTGPLGPKT LCNACGVRYK SGRLVPEYRP ASSPTFISAR HSNSHRKVLE 300 LRRQKDLQRH QAHHHQHQLL SQPTIFGVSN GGDEFLLHHH QNCGPNFRHL I*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MEASDLFVSG FFSHAGDEQI PNNINNNNNC NNFSVDDLLV IPKEDEVMAD AFFNNITGNS  60
TDSSTVTVVD SCNSSVSGGD GQFNGNLSGR SFTDAPFPNS ELCVPFDDLA ELEWLSNFVE  120
ESFSSDDVQN LQFIPVANIN SSTITTDSSS SATTFSTGPN SPPAFPTDTS VPGKARSKRS  180
RAAPCDWSSR LQLLLSPATS SSESNSISPP SANNTTFATA KATKAPSKKR ESVETPGRKC  240
LHCASDKTPQ WRTGPLGPKT LCNACGVRYK SGRLVPEYRP ASSPTFISAR HSNSHRKVLE  300
LRRQKDLQRH QAHHHQHQLL SQPTIFGVSN GGDEFLLHHH QNCGPNFRHL I*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400004491

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006343049.2	0.0	PREDICTED: GATA transcription factor 12-like
Swissprot	P69781	8e-77	GAT12_ARATH; GATA transcription factor 12
TrEMBL	M0ZRF8	0.0	M0ZRF8_SOLTU; GATA transcription factor
STRING	PGSC0003DMT400006491	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1919	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	1e-67	GATA transcription factor 12

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400004491

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]