PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004435
Common NameLOC102595502
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 209aa    MW: 22452.7 Da    PI: 9.0622
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004435genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.19.6e-391676262
                zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                          ++++lkcprCds ntkfCyynny+lsqPr++Ck+CrryWtkGG+lrn+PvGgg+rk+ k+s
  PGSC0003DMP400004435 16 EQEHLKCPRCDSPNTKFCYYNNYNLSQPRHYCKSCRRYWTKGGTLRNIPVGGGSRKSTKRS 76
                          57899***************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-26868IPR003851Zinc finger, Dof-type
PfamPF027018.6E-331874IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8632074IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102258IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MQDPSIYSQI KPQFPEQEHL KCPRCDSPNT KFCYYNNYNL SQPRHYCKSC RRYWTKGGTL  60
RNIPVGGGSR KSTKRSSSSS KKSSSTTTSS PATPPLTSPS SSTNPKPEPF CIPAIPSFDV  120
MTTGPFSSLL ASTEPQFGNF LEALNPNNNG STLQLGNPIP SSGSGSNHQN GNTSYLGVQN  180
GGESNNCWNG GNNGWPDLAI FTPGSNFQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004435
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343007.11e-149PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBLM0ZRB21e-148M0ZRB2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000064211e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-36DOF zinc finger protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]