PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004412
Common NameLOC102585450
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 542aa    MW: 59244.3 Da    PI: 8.9796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004412genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05101123123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C+k F r  nL+ H r H
  PGSC0003DMP400004412 101 FVCEICNKGFQRDQNLQLHRRGH 123
                           89*******************88 PP
2zf-C2H213.30.00026177199123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++C+k++  +s+ k H +t+
  PGSC0003DMP400004412 177 WKCEKCSKRYAVQSDWKAHSKTC 199
                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-5100123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.16E-6100123No hitNo description
SMARTSM003550.017101123IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949101123IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SMARTSM00355250142172IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4165198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.16E-6172197No hitNo description
SMARTSM00355130177197IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MMMKDLMNQQ AQVPVVVMEE NMSNLTSASG EASVSSSNRN DNNNNNNNNI YPHHQYNFAP  60
PNQQTQPAQQ IKKKRNQPGN PDPEAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR  120
RGHNLPWKLK QRTSKEIRKK VYVCPETSCV HHDPARALGD LTGIKKHFCR KHGEKKWKCE  180
KCSKRYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAITGNP  240
ILPSQAGSST SQMNFQFQPF NHEIPVTFSL KKEQQTGFNL RPEIPPWLLV GGGGGPGPGP  300
PQPHPIDLSS SIFQSSRFSD QDYTQSHHHQ QGGFMNPNPS LSGPTSGAMA SPHISATALL  360
QKAAQMGATM SNKASTVSAV SSGPGPAMLM RPHQIHVSAT ATAAVSVSNT TDFGLNLSSR  420
EDLTTGFFNS LASYGNKAAN PSAVIAPVTI PLSTAPHPTP SLQDMMNSYS SANPTGFEGS  480
NFDDPFSILN PKNENGGGND DMTKDFLGLR PLSHSDIFNI AGLVKYTPNE NQSQNHKTWQ  540
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35173234364Zinc finger protein JACKDAW
5b3h_F2e-35173234364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127139KLKQRTSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004412
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136590.0BT013659.1 Lycopersicon esculentum clone 132478R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342975.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_006342976.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-126IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM0ZR950.0M0ZR95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-114indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]