PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400004389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 284aa MW: 31868.3 Da PI: 10.1007 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.8 | 3.1e-32 | 130 | 186 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQyq+Il+RRq Ra+le+++kl +k+rkpylheSRh+hAl+R+Rg+gGrF PGSC0003DMP400004389 130 DEPIFVNAKQYQAILRRRQYRARLEAQNKL-SKGRKPYLHESRHRHALNRARGPGGRF 186 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.4E-33 | 128 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.838 | 129 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.5E-27 | 131 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-22 | 132 | 154 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-22 | 163 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 284 aa Download sequence Send to blast |
MSTFPGPQNS KELNYHFQDQ DSSSTQSTSQ SCPEAANEGE RKSHGKSSMP LRAGSVRSSG 60 KSDDSQSVSS QEHGWTFDMY QKNFAVVPFP HPDPYYHGLV AAYGNQAMVQ SQMLGMVSPR 120 VPLPLDLKQD EPIFVNAKQY QAILRRRQYR ARLEAQNKLS KGRKPYLHES RHRHALNRAR 180 GPGGRFVNMK KPRESKSPDL INGQDNQVSD ELQLNRKMLE PNIHQSRSYS TPVYSGITSG 240 SNGDAIYHHQ SFKYSAFSAR NRGTSQLDKE KKDNTSNPCL SSF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 8e-21 | 130 | 200 | 2 | 69 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400004389 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-127 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342951.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3-like | ||||
TrEMBL | M0ZR71 | 0.0 | M0ZR71_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400006358 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13966 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72830.1 | 2e-43 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400004389 |
Publications ? help Back to Top | |||
---|---|---|---|
|